Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS19090 and CA265_RS19095 are separated by 140 nucleotides CA265_RS19095 and CA265_RS19100 are separated by 73 nucleotides CA265_RS19100 and CA265_RS19105 are separated by 121 nucleotides CA265_RS19105 and CA265_RS19110 are separated by 27 nucleotides
CA265_RS19090: CA265_RS19090 - hybrid sensor histidine kinase/response regulator, at 4,744,836 to 4,747,313
_RS19090
CA265_RS19095: CA265_RS19095 - DNA-binding transcriptional regulator, at 4,747,454 to 4,748,143
_RS19095
CA265_RS19100: CA265_RS19100 - damage-inducible protein DinB, at 4,748,217 to 4,748,777
_RS19100
CA265_RS19105: CA265_RS19105 - hypothetical protein, at 4,748,899 to 4,749,420
_RS19105
CA265_RS19110: CA265_RS19110 - 23S rRNA pseudouridine synthase F, at 4,749,448 to 4,750,422
_RS19110
Position (kb) 4748
4749 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4747.227 kb on + strand at 4747.263 kb on + strand at 4747.326 kb on - strand at 4747.375 kb on + strand at 4747.376 kb on - strand at 4747.417 kb on - strand at 4747.441 kb on - strand at 4747.602 kb on + strand, within CA265_RS19095 at 4747.628 kb on + strand, within CA265_RS19095 at 4747.629 kb on - strand, within CA265_RS19095 at 4747.629 kb on - strand, within CA265_RS19095 at 4747.750 kb on + strand, within CA265_RS19095 at 4747.824 kb on + strand, within CA265_RS19095 at 4747.825 kb on - strand, within CA265_RS19095 at 4747.825 kb on - strand, within CA265_RS19095 at 4747.931 kb on - strand, within CA265_RS19095 at 4747.988 kb on - strand, within CA265_RS19095 at 4748.021 kb on - strand, within CA265_RS19095 at 4748.148 kb on - strand at 4748.280 kb on - strand, within CA265_RS19100 at 4748.288 kb on + strand, within CA265_RS19100 at 4748.299 kb on + strand, within CA265_RS19100 at 4748.490 kb on + strand, within CA265_RS19100 at 4748.490 kb on + strand, within CA265_RS19100 at 4748.491 kb on - strand, within CA265_RS19100 at 4748.608 kb on + strand, within CA265_RS19100 at 4748.709 kb on + strand, within CA265_RS19100 at 4748.710 kb on - strand, within CA265_RS19100 at 4748.888 kb on + strand at 4748.956 kb on + strand, within CA265_RS19105 at 4748.957 kb on - strand, within CA265_RS19105 at 4748.961 kb on + strand, within CA265_RS19105 at 4749.024 kb on + strand, within CA265_RS19105 at 4749.047 kb on + strand, within CA265_RS19105 at 4749.118 kb on - strand, within CA265_RS19105 at 4749.183 kb on - strand, within CA265_RS19105 at 4749.251 kb on - strand, within CA265_RS19105 at 4749.418 kb on + strand at 4749.419 kb on - strand at 4749.527 kb on - strand at 4749.567 kb on + strand, within CA265_RS19110 at 4749.568 kb on - strand, within CA265_RS19110 at 4749.682 kb on - strand, within CA265_RS19110 at 4749.691 kb on - strand, within CA265_RS19110 at 4749.714 kb on + strand, within CA265_RS19110 at 4749.715 kb on - strand, within CA265_RS19110 at 4749.715 kb on - strand, within CA265_RS19110 at 4749.724 kb on + strand, within CA265_RS19110 at 4749.725 kb on - strand, within CA265_RS19110 at 4749.747 kb on - strand, within CA265_RS19110
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 4,747,227 + +0.3 4,747,263 + -1.0 4,747,326 - -1.3 4,747,375 + +1.4 4,747,376 - +0.4 4,747,417 - -0.9 4,747,441 - +0.3 4,747,602 + CA265_RS19095 0.21 +1.2 4,747,628 + CA265_RS19095 0.25 -1.4 4,747,629 - CA265_RS19095 0.25 -0.3 4,747,629 - CA265_RS19095 0.25 +0.6 4,747,750 + CA265_RS19095 0.43 -0.4 4,747,824 + CA265_RS19095 0.54 -0.8 4,747,825 - CA265_RS19095 0.54 +0.1 4,747,825 - CA265_RS19095 0.54 +0.1 4,747,931 - CA265_RS19095 0.69 +0.2 4,747,988 - CA265_RS19095 0.77 -0.6 4,748,021 - CA265_RS19095 0.82 -0.5 4,748,148 - -0.1 4,748,280 - CA265_RS19100 0.11 +0.5 4,748,288 + CA265_RS19100 0.13 +0.3 4,748,299 + CA265_RS19100 0.15 -0.4 4,748,490 + CA265_RS19100 0.49 +0.4 4,748,490 + CA265_RS19100 0.49 +1.8 4,748,491 - CA265_RS19100 0.49 +0.3 4,748,608 + CA265_RS19100 0.70 -0.9 4,748,709 + CA265_RS19100 0.88 +0.4 4,748,710 - CA265_RS19100 0.88 +1.7 4,748,888 + -0.3 4,748,956 + CA265_RS19105 0.11 -0.1 4,748,957 - CA265_RS19105 0.11 +0.1 4,748,961 + CA265_RS19105 0.12 +0.1 4,749,024 + CA265_RS19105 0.24 -0.7 4,749,047 + CA265_RS19105 0.28 +0.9 4,749,118 - CA265_RS19105 0.42 -0.5 4,749,183 - CA265_RS19105 0.54 +0.1 4,749,251 - CA265_RS19105 0.67 +0.3 4,749,418 + -0.5 4,749,419 - +0.7 4,749,527 - -0.1 4,749,567 + CA265_RS19110 0.12 -0.1 4,749,568 - CA265_RS19110 0.12 -0.1 4,749,682 - CA265_RS19110 0.24 +0.5 4,749,691 - CA265_RS19110 0.25 -0.0 4,749,714 + CA265_RS19110 0.27 +0.3 4,749,715 - CA265_RS19110 0.27 -0.3 4,749,715 - CA265_RS19110 0.27 -0.8 4,749,724 + CA265_RS19110 0.28 +1.5 4,749,725 - CA265_RS19110 0.28 -0.6 4,749,747 - CA265_RS19110 0.31 -1.9
Or see this region's nucleotide sequence