Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14520

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14515 and CA265_RS14520 are separated by 615 nucleotidesCA265_RS14520 and CA265_RS14525 are separated by 99 nucleotidesCA265_RS14525 and CA265_RS14530 are separated by 49 nucleotides CA265_RS14515: CA265_RS14515 - aminodeoxychorismate synthase component I, at 3,657,361 to 3,658,617 _RS14515 CA265_RS14520: CA265_RS14520 - peptidase M48, at 3,659,233 to 3,660,039 _RS14520 CA265_RS14525: CA265_RS14525 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,660,139 to 3,660,786 _RS14525 CA265_RS14530: CA265_RS14530 - nicotinate-nucleotide diphosphorylase (carboxylating), at 3,660,836 to 3,661,678 _RS14530 Position (kb) 3659 3660 3661Strain fitness (log2 ratio) -1 0 1 2 3 4at 3658.347 kb on + strand, within CA265_RS14515at 3658.393 kb on + strand, within CA265_RS14515at 3658.470 kb on - strand, within CA265_RS14515at 3658.490 kb on - strand, within CA265_RS14515at 3658.512 kb on - strandat 3658.615 kb on + strandat 3658.677 kb on - strandat 3658.679 kb on - strandat 3658.731 kb on - strandat 3658.731 kb on - strandat 3658.733 kb on - strandat 3658.852 kb on + strandat 3658.853 kb on - strandat 3658.855 kb on - strandat 3658.855 kb on - strandat 3658.908 kb on + strandat 3659.076 kb on + strandat 3659.091 kb on - strandat 3659.126 kb on + strandat 3659.227 kb on + strandat 3659.242 kb on - strandat 3659.246 kb on + strandat 3659.247 kb on - strandat 3659.293 kb on - strandat 3659.311 kb on - strandat 3659.637 kb on + strand, within CA265_RS14520at 3659.638 kb on - strand, within CA265_RS14520at 3659.706 kb on + strand, within CA265_RS14520at 3659.735 kb on - strand, within CA265_RS14520at 3659.756 kb on + strand, within CA265_RS14520at 3659.756 kb on + strand, within CA265_RS14520at 3659.778 kb on - strand, within CA265_RS14520at 3659.781 kb on + strand, within CA265_RS14520at 3659.782 kb on - strand, within CA265_RS14520at 3659.836 kb on - strand, within CA265_RS14520at 3659.836 kb on - strand, within CA265_RS14520at 3659.836 kb on - strand, within CA265_RS14520at 3659.867 kb on - strand, within CA265_RS14520at 3659.958 kb on + strand, within CA265_RS14520at 3660.052 kb on - strandat 3660.066 kb on + strandat 3660.098 kb on + strandat 3660.098 kb on + strandat 3660.105 kb on - strandat 3660.111 kb on - strandat 3660.111 kb on - strandat 3660.838 kb on - strandat 3660.905 kb on + strandat 3660.922 kb on - strand, within CA265_RS14530at 3660.934 kb on - strand, within CA265_RS14530at 3661.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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3,658,347 + CA265_RS14515 0.78 +0.1
3,658,393 + CA265_RS14515 0.82 +0.6
3,658,470 - CA265_RS14515 0.88 -0.4
3,658,490 - CA265_RS14515 0.90 +0.7
3,658,512 - -1.0
3,658,615 + -0.2
3,658,677 - -0.8
3,658,679 - +1.3
3,658,731 - +0.6
3,658,731 - -0.8
3,658,733 - +0.1
3,658,852 + +0.8
3,658,853 - +1.3
3,658,855 - +0.6
3,658,855 - -0.1
3,658,908 + +0.3
3,659,076 + -0.4
3,659,091 - -1.5
3,659,126 + +0.1
3,659,227 + -0.4
3,659,242 - -0.7
3,659,246 + +0.7
3,659,247 - +0.3
3,659,293 - +0.3
3,659,311 - -0.8
3,659,637 + CA265_RS14520 0.50 +0.1
3,659,638 - CA265_RS14520 0.50 -0.1
3,659,706 + CA265_RS14520 0.59 +1.2
3,659,735 - CA265_RS14520 0.62 +0.6
3,659,756 + CA265_RS14520 0.65 +1.9
3,659,756 + CA265_RS14520 0.65 +1.9
3,659,778 - CA265_RS14520 0.68 +0.5
3,659,781 + CA265_RS14520 0.68 +0.2
3,659,782 - CA265_RS14520 0.68 +0.8
3,659,836 - CA265_RS14520 0.75 +0.6
3,659,836 - CA265_RS14520 0.75 +0.2
3,659,836 - CA265_RS14520 0.75 -0.7
3,659,867 - CA265_RS14520 0.79 +0.1
3,659,958 + CA265_RS14520 0.90 -1.2
3,660,052 - -1.2
3,660,066 + +1.2
3,660,098 + +0.2
3,660,098 + -0.9
3,660,105 - +0.6
3,660,111 - +0.2
3,660,111 - -0.7
3,660,838 - -0.7
3,660,905 + +3.9
3,660,922 - CA265_RS14530 0.10 +1.1
3,660,934 - CA265_RS14530 0.12 +0.6
3,661,031 - +1.3

Or see this region's nucleotide sequence