Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10920

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS10915 and CA265_RS10920 are separated by 784 nucleotidesCA265_RS10920 and CA265_RS10925 are separated by 80 nucleotidesCA265_RS10925 and CA265_RS10930 are separated by 92 nucleotides CA265_RS10915: CA265_RS10915 - hypothetical protein, at 2,686,065 to 2,686,544 _RS10915 CA265_RS10920: CA265_RS10920 - SsrA-binding protein, at 2,687,329 to 2,687,778 _RS10920 CA265_RS10925: CA265_RS10925 - protein-L-isoaspartate O-methyltransferase, at 2,687,859 to 2,688,515 _RS10925 CA265_RS10930: CA265_RS10930 - primosomal protein N', at 2,688,608 to 2,691,088 _RS10930 Position (kb) 2687 2688Strain fitness (log2 ratio) -1 0 1at 2686.450 kb on + strand, within CA265_RS10915at 2686.594 kb on + strandat 2686.596 kb on + strandat 2686.597 kb on - strandat 2686.817 kb on + strandat 2686.818 kb on - strandat 2686.835 kb on + strandat 2686.840 kb on - strandat 2686.973 kb on - strandat 2687.093 kb on - strandat 2687.093 kb on - strandat 2687.205 kb on + strandat 2687.205 kb on + strandat 2687.207 kb on + strandat 2687.208 kb on - strandat 2687.229 kb on + strandat 2687.283 kb on + strandat 2687.284 kb on - strandat 2687.285 kb on + strandat 2687.295 kb on + strandat 2687.297 kb on + strandat 2687.312 kb on + strandat 2687.392 kb on + strand, within CA265_RS10920at 2687.478 kb on + strand, within CA265_RS10920at 2687.493 kb on - strand, within CA265_RS10920at 2687.494 kb on + strand, within CA265_RS10920at 2687.573 kb on + strand, within CA265_RS10920at 2687.627 kb on - strand, within CA265_RS10920at 2687.730 kb on + strand, within CA265_RS10920at 2687.743 kb on - strandat 2687.857 kb on + strandat 2687.857 kb on + strandat 2687.858 kb on - strandat 2688.409 kb on - strand, within CA265_RS10925at 2688.548 kb on + strandat 2688.610 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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2,686,450 + CA265_RS10915 0.80 +0.9
2,686,594 + +1.0
2,686,596 + +0.9
2,686,597 - -0.1
2,686,817 + +0.1
2,686,818 - -0.1
2,686,835 + -0.4
2,686,840 - +0.6
2,686,973 - +0.6
2,687,093 - +0.3
2,687,093 - -0.0
2,687,205 + +1.1
2,687,205 + +0.2
2,687,207 + +0.6
2,687,208 - -0.3
2,687,229 + -0.3
2,687,283 + +0.6
2,687,284 - +0.1
2,687,285 + -0.9
2,687,295 + +0.6
2,687,297 + -0.7
2,687,312 + +0.8
2,687,392 + CA265_RS10920 0.14 +1.6
2,687,478 + CA265_RS10920 0.33 +0.0
2,687,493 - CA265_RS10920 0.36 +0.3
2,687,494 + CA265_RS10920 0.37 -1.2
2,687,573 + CA265_RS10920 0.54 +0.6
2,687,627 - CA265_RS10920 0.66 +1.2
2,687,730 + CA265_RS10920 0.89 +0.6
2,687,743 - +0.9
2,687,857 + +0.4
2,687,857 + -0.6
2,687,858 - -1.0
2,688,409 - CA265_RS10925 0.84 +1.4
2,688,548 + -0.4
2,688,610 - -0.1

Or see this region's nucleotide sequence