Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10540
Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Thallium(I) acetate 0.001 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,609,763 | - | +0.2 | |||
2,609,832 | + | -0.7 | |||
2,609,892 | + | -0.4 | |||
2,609,905 | - | +0.8 | |||
2,609,905 | - | -0.3 | |||
2,610,017 | + | -1.5 | |||
2,610,017 | + | -0.4 | |||
2,610,126 | + | CA265_RS10540 | 0.35 | +0.6 | |
2,610,127 | - | CA265_RS10540 | 0.36 | +1.6 | |
2,610,216 | + | -0.4 | |||
2,610,228 | + | -1.1 | |||
2,610,258 | + | +0.1 | |||
2,610,266 | + | -0.6 | |||
2,610,266 | + | -0.9 | |||
2,610,268 | + | +0.2 | |||
2,610,268 | + | +0.7 | |||
2,610,296 | - | -1.8 | |||
2,610,394 | + | -0.8 | |||
2,610,395 | - | -1.5 | |||
2,610,412 | - | -0.3 | |||
2,610,436 | - | -0.2 | |||
2,610,481 | + | +0.1 | |||
2,610,589 | - | -0.2 | |||
2,610,592 | + | +0.7 | |||
2,610,656 | + | -0.8 | |||
2,610,710 | + | +0.8 | |||
2,610,787 | + | +0.2 | |||
2,610,787 | + | +0.9 | |||
2,610,817 | + | +0.5 | |||
2,610,822 | + | -0.2 | |||
2,610,847 | + | +1.0 | |||
2,610,868 | + | +1.1 | |||
2,610,877 | - | +0.1 | |||
2,610,884 | + | -0.3 | |||
2,610,885 | - | +1.7 | |||
2,610,992 | + | -0.5 | |||
2,610,992 | + | -0.3 | |||
2,610,992 | + | -0.4 | |||
2,610,992 | + | +0.1 | |||
2,610,993 | - | -0.2 | |||
2,611,025 | + | -0.9 | |||
2,611,053 | - | -2.3 | |||
2,611,072 | - | -0.2 | |||
2,611,115 | - | -0.7 |
Or see this region's nucleotide sequence