Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS10540

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS10535 and CA265_RS10540 are separated by 328 nucleotidesCA265_RS10540 and CA265_RS10545 are separated by 940 nucleotides CA265_RS10535: CA265_RS10535 - isoprenyl synthetase, at 2,608,785 to 2,609,759 _RS10535 CA265_RS10540: CA265_RS10540 - dinitrogenase iron-molybdenum cofactor biosynthesis protein, at 2,610,088 to 2,610,195 _RS10540 CA265_RS10545: CA265_RS10545 - hypothetical protein, at 2,611,136 to 2,612,116 _RS10545 Position (kb) 2610 2611Strain fitness (log2 ratio) -2 -1 0 1at 2609.763 kb on - strandat 2609.832 kb on + strandat 2609.892 kb on + strandat 2609.905 kb on - strandat 2609.905 kb on - strandat 2610.017 kb on + strandat 2610.017 kb on + strandat 2610.126 kb on + strand, within CA265_RS10540at 2610.127 kb on - strand, within CA265_RS10540at 2610.216 kb on + strandat 2610.228 kb on + strandat 2610.258 kb on + strandat 2610.266 kb on + strandat 2610.266 kb on + strandat 2610.268 kb on + strandat 2610.268 kb on + strandat 2610.296 kb on - strandat 2610.394 kb on + strandat 2610.395 kb on - strandat 2610.412 kb on - strandat 2610.436 kb on - strandat 2610.481 kb on + strandat 2610.589 kb on - strandat 2610.592 kb on + strandat 2610.656 kb on + strandat 2610.710 kb on + strandat 2610.787 kb on + strandat 2610.787 kb on + strandat 2610.817 kb on + strandat 2610.822 kb on + strandat 2610.847 kb on + strandat 2610.868 kb on + strandat 2610.877 kb on - strandat 2610.884 kb on + strandat 2610.885 kb on - strandat 2610.992 kb on + strandat 2610.992 kb on + strandat 2610.992 kb on + strandat 2610.992 kb on + strandat 2610.993 kb on - strandat 2611.025 kb on + strandat 2611.053 kb on - strandat 2611.072 kb on - strandat 2611.115 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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2,609,763 - +0.2
2,609,832 + -0.7
2,609,892 + -0.4
2,609,905 - +0.8
2,609,905 - -0.3
2,610,017 + -1.5
2,610,017 + -0.4
2,610,126 + CA265_RS10540 0.35 +0.6
2,610,127 - CA265_RS10540 0.36 +1.6
2,610,216 + -0.4
2,610,228 + -1.1
2,610,258 + +0.1
2,610,266 + -0.6
2,610,266 + -0.9
2,610,268 + +0.2
2,610,268 + +0.7
2,610,296 - -1.8
2,610,394 + -0.8
2,610,395 - -1.5
2,610,412 - -0.3
2,610,436 - -0.2
2,610,481 + +0.1
2,610,589 - -0.2
2,610,592 + +0.7
2,610,656 + -0.8
2,610,710 + +0.8
2,610,787 + +0.2
2,610,787 + +0.9
2,610,817 + +0.5
2,610,822 + -0.2
2,610,847 + +1.0
2,610,868 + +1.1
2,610,877 - +0.1
2,610,884 + -0.3
2,610,885 - +1.7
2,610,992 + -0.5
2,610,992 + -0.3
2,610,992 + -0.4
2,610,992 + +0.1
2,610,993 - -0.2
2,611,025 + -0.9
2,611,053 - -2.3
2,611,072 - -0.2
2,611,115 - -0.7

Or see this region's nucleotide sequence