Experiment: R2A with Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00465 and CA265_RS00470 are separated by 83 nucleotides CA265_RS00470 and CA265_RS00475 are separated by 29 nucleotides CA265_RS00475 and CA265_RS00480 are separated by 30 nucleotides CA265_RS00480 and CA265_RS00485 are separated by 82 nucleotides
CA265_RS00465: CA265_RS00465 - cupin, at 100,480 to 100,956
_RS00465
CA265_RS00470: CA265_RS00470 - hypothetical protein, at 101,040 to 101,687
_RS00470
CA265_RS00475: CA265_RS00475 - isoquinoline 1-oxidoreductase, at 101,717 to 103,978
_RS00475
CA265_RS00480: CA265_RS00480 - (2Fe-2S)-binding protein, at 104,009 to 104,470
_RS00480
CA265_RS00485: CA265_RS00485 - acyltransferase, at 104,553 to 105,668
_RS00485
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 100.754 kb on + strand, within CA265_RS00465 at 100.755 kb on - strand, within CA265_RS00465 at 100.759 kb on + strand, within CA265_RS00465 at 100.789 kb on - strand, within CA265_RS00465 at 100.811 kb on + strand, within CA265_RS00465 at 100.987 kb on - strand at 101.018 kb on - strand at 101.045 kb on + strand at 101.055 kb on - strand at 101.057 kb on + strand at 101.058 kb on - strand at 101.122 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.126 kb on + strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.127 kb on - strand, within CA265_RS00470 at 101.128 kb on + strand, within CA265_RS00470 at 101.213 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.232 kb on + strand, within CA265_RS00470 at 101.240 kb on - strand, within CA265_RS00470 at 101.346 kb on - strand, within CA265_RS00470 at 101.355 kb on + strand, within CA265_RS00470 at 101.388 kb on - strand, within CA265_RS00470 at 101.390 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.525 kb on + strand, within CA265_RS00470 at 101.630 kb on + strand at 101.667 kb on + strand at 101.667 kb on + strand at 101.686 kb on - strand at 101.759 kb on - strand at 101.759 kb on - strand at 101.801 kb on - strand at 101.818 kb on - strand at 101.822 kb on - strand at 101.822 kb on - strand at 101.880 kb on - strand at 101.880 kb on - strand at 101.900 kb on - strand at 101.946 kb on + strand, within CA265_RS00475 at 101.999 kb on - strand, within CA265_RS00475 at 102.064 kb on + strand, within CA265_RS00475 at 102.080 kb on + strand, within CA265_RS00475 at 102.080 kb on + strand, within CA265_RS00475 at 102.122 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.161 kb on - strand, within CA265_RS00475 at 102.220 kb on + strand, within CA265_RS00475 at 102.225 kb on - strand, within CA265_RS00475 at 102.254 kb on - strand, within CA265_RS00475 at 102.337 kb on + strand, within CA265_RS00475 at 102.353 kb on - strand, within CA265_RS00475 at 102.375 kb on - strand, within CA265_RS00475 at 102.479 kb on - strand, within CA265_RS00475 at 102.479 kb on - strand, within CA265_RS00475 at 102.496 kb on - strand, within CA265_RS00475 at 102.501 kb on + strand, within CA265_RS00475 at 102.572 kb on - strand, within CA265_RS00475 at 102.647 kb on - strand, within CA265_RS00475 at 102.649 kb on + strand, within CA265_RS00475 at 102.717 kb on - strand, within CA265_RS00475 at 102.743 kb on - strand, within CA265_RS00475 at 102.760 kb on - strand, within CA265_RS00475 at 102.817 kb on + strand, within CA265_RS00475 at 102.821 kb on + strand, within CA265_RS00475 at 102.821 kb on + strand, within CA265_RS00475 at 102.822 kb on - strand, within CA265_RS00475 at 102.822 kb on - strand, within CA265_RS00475 at 102.824 kb on - strand, within CA265_RS00475 at 102.955 kb on - strand, within CA265_RS00475 at 103.031 kb on + strand, within CA265_RS00475 at 103.075 kb on + strand, within CA265_RS00475 at 103.077 kb on + strand, within CA265_RS00475 at 103.108 kb on + strand, within CA265_RS00475 at 103.109 kb on - strand, within CA265_RS00475 at 103.113 kb on - strand, within CA265_RS00475 at 103.133 kb on + strand, within CA265_RS00475 at 103.135 kb on + strand, within CA265_RS00475 at 103.148 kb on - strand, within CA265_RS00475 at 103.192 kb on + strand, within CA265_RS00475 at 103.260 kb on - strand, within CA265_RS00475 at 103.288 kb on + strand, within CA265_RS00475 at 103.289 kb on - strand, within CA265_RS00475 at 103.295 kb on - strand, within CA265_RS00475 at 103.454 kb on + strand, within CA265_RS00475 at 103.470 kb on - strand, within CA265_RS00475 at 103.588 kb on - strand, within CA265_RS00475 at 103.592 kb on - strand, within CA265_RS00475 at 103.617 kb on - strand, within CA265_RS00475 at 103.630 kb on - strand, within CA265_RS00475 at 103.656 kb on + strand, within CA265_RS00475 at 103.756 kb on - strand at 103.774 kb on + strand at 103.778 kb on + strand at 103.882 kb on - strand at 103.909 kb on + strand at 103.909 kb on + strand at 103.910 kb on - strand at 103.988 kb on - strand at 103.988 kb on - strand at 104.009 kb on - strand at 104.019 kb on + strand at 104.041 kb on + strand at 104.147 kb on - strand, within CA265_RS00480 at 104.151 kb on + strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.152 kb on - strand, within CA265_RS00480 at 104.193 kb on + strand, within CA265_RS00480 at 104.193 kb on + strand, within CA265_RS00480 at 104.286 kb on + strand, within CA265_RS00480 at 104.375 kb on - strand, within CA265_RS00480 at 104.396 kb on - strand, within CA265_RS00480 at 104.414 kb on + strand, within CA265_RS00480 at 104.479 kb on + strand at 104.555 kb on - strand at 104.584 kb on - strand at 104.597 kb on - strand at 104.628 kb on - strand at 104.730 kb on + strand, within CA265_RS00485 at 104.751 kb on + strand, within CA265_RS00485 at 104.751 kb on + strand, within CA265_RS00485 at 104.752 kb on - strand, within CA265_RS00485 at 104.752 kb on - strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.792 kb on + strand, within CA265_RS00485 at 104.821 kb on - strand, within CA265_RS00485 at 104.908 kb on + strand, within CA265_RS00485 at 104.908 kb on + strand, within CA265_RS00485 at 104.909 kb on - strand, within CA265_RS00485 at 104.909 kb on - strand, within CA265_RS00485 at 104.910 kb on + strand at 104.910 kb on + strand, within CA265_RS00485 at 104.910 kb on + strand, within CA265_RS00485 at 104.911 kb on - strand, within CA265_RS00485 at 104.926 kb on - strand, within CA265_RS00485 at 104.941 kb on - strand, within CA265_RS00485 at 104.954 kb on + strand, within CA265_RS00485
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml remove 100,754 + CA265_RS00465 0.57 -0.1 100,755 - CA265_RS00465 0.58 -0.1 100,759 + CA265_RS00465 0.58 +0.6 100,789 - CA265_RS00465 0.65 +0.5 100,811 + CA265_RS00465 0.69 +0.7 100,987 - -1.2 101,018 - -0.4 101,045 + +1.7 101,055 - +0.3 101,057 + -1.7 101,058 - -0.5 101,122 + CA265_RS00470 0.13 -0.6 101,126 + CA265_RS00470 0.13 -0.8 101,126 + CA265_RS00470 0.13 +2.6 101,126 + CA265_RS00470 0.13 -0.2 101,126 + CA265_RS00470 0.13 +0.5 101,127 - CA265_RS00470 0.13 +0.7 101,127 - CA265_RS00470 0.13 +0.1 101,127 - CA265_RS00470 0.13 -0.4 101,127 - CA265_RS00470 0.13 +0.3 101,127 - CA265_RS00470 0.13 -1.1 101,127 - CA265_RS00470 0.13 -1.7 101,128 + CA265_RS00470 0.14 -1.4 101,213 + CA265_RS00470 0.27 -0.4 101,232 + CA265_RS00470 0.30 +0.6 101,232 + CA265_RS00470 0.30 -1.0 101,240 - CA265_RS00470 0.31 -0.6 101,346 - CA265_RS00470 0.47 +0.2 101,355 + CA265_RS00470 0.49 -1.9 101,388 - CA265_RS00470 0.54 -1.3 101,390 + CA265_RS00470 0.54 -0.7 101,525 + CA265_RS00470 0.75 +0.4 101,525 + CA265_RS00470 0.75 +3.0 101,525 + CA265_RS00470 0.75 +1.6 101,630 + +0.7 101,667 + -1.0 101,667 + +0.0 101,686 - -2.0 101,759 - -0.2 101,759 - -2.6 101,801 - +0.7 101,818 - +0.4 101,822 - +0.2 101,822 - +0.9 101,880 - +0.2 101,880 - +0.3 101,900 - +0.4 101,946 + CA265_RS00475 0.10 +0.4 101,999 - CA265_RS00475 0.12 +0.8 102,064 + CA265_RS00475 0.15 +1.1 102,080 + CA265_RS00475 0.16 -0.6 102,080 + CA265_RS00475 0.16 +0.6 102,122 - CA265_RS00475 0.18 -0.6 102,161 - CA265_RS00475 0.20 -1.0 102,161 - CA265_RS00475 0.20 +0.1 102,161 - CA265_RS00475 0.20 -0.2 102,220 + CA265_RS00475 0.22 +0.9 102,225 - CA265_RS00475 0.22 +0.4 102,254 - CA265_RS00475 0.24 +0.3 102,337 + CA265_RS00475 0.27 +1.0 102,353 - CA265_RS00475 0.28 +0.2 102,375 - CA265_RS00475 0.29 +0.2 102,479 - CA265_RS00475 0.34 -0.8 102,479 - CA265_RS00475 0.34 -0.4 102,496 - CA265_RS00475 0.34 -0.2 102,501 + CA265_RS00475 0.35 +0.7 102,572 - CA265_RS00475 0.38 -0.0 102,647 - CA265_RS00475 0.41 +0.1 102,649 + CA265_RS00475 0.41 -0.4 102,717 - CA265_RS00475 0.44 +0.6 102,743 - CA265_RS00475 0.45 +0.2 102,760 - CA265_RS00475 0.46 -0.4 102,817 + CA265_RS00475 0.49 +0.2 102,821 + CA265_RS00475 0.49 -1.2 102,821 + CA265_RS00475 0.49 -0.4 102,822 - CA265_RS00475 0.49 +1.1 102,822 - CA265_RS00475 0.49 +0.7 102,824 - CA265_RS00475 0.49 -1.0 102,955 - CA265_RS00475 0.55 -0.7 103,031 + CA265_RS00475 0.58 +0.3 103,075 + CA265_RS00475 0.60 +0.5 103,077 + CA265_RS00475 0.60 -1.1 103,108 + CA265_RS00475 0.61 +3.0 103,109 - CA265_RS00475 0.62 -0.7 103,113 - CA265_RS00475 0.62 +0.6 103,133 + CA265_RS00475 0.63 +1.3 103,135 + CA265_RS00475 0.63 -1.7 103,148 - CA265_RS00475 0.63 -0.3 103,192 + CA265_RS00475 0.65 +0.5 103,260 - CA265_RS00475 0.68 +1.4 103,288 + CA265_RS00475 0.69 -1.0 103,289 - CA265_RS00475 0.69 +0.5 103,295 - CA265_RS00475 0.70 -1.2 103,454 + CA265_RS00475 0.77 +1.3 103,470 - CA265_RS00475 0.77 -0.9 103,588 - CA265_RS00475 0.83 +0.0 103,592 - CA265_RS00475 0.83 -2.1 103,617 - CA265_RS00475 0.84 -0.6 103,630 - CA265_RS00475 0.85 -0.5 103,656 + CA265_RS00475 0.86 +0.5 103,756 - -0.3 103,774 + +0.1 103,778 + -0.3 103,882 - -0.3 103,909 + +0.0 103,909 + -0.2 103,910 - -1.2 103,988 - -0.2 103,988 - +0.1 104,009 - -1.4 104,019 + +0.1 104,041 + -0.6 104,147 - CA265_RS00480 0.30 +1.1 104,151 + CA265_RS00480 0.31 +1.0 104,152 - CA265_RS00480 0.31 +1.0 104,152 - CA265_RS00480 0.31 -0.2 104,152 - CA265_RS00480 0.31 +0.0 104,193 + CA265_RS00480 0.40 +0.2 104,193 + CA265_RS00480 0.40 +0.8 104,286 + CA265_RS00480 0.60 +1.4 104,375 - CA265_RS00480 0.79 +0.1 104,396 - CA265_RS00480 0.84 +2.4 104,414 + CA265_RS00480 0.88 -0.3 104,479 + +0.4 104,555 - -0.7 104,584 - +0.9 104,597 - -0.2 104,628 - -0.1 104,730 + CA265_RS00485 0.16 -1.9 104,751 + CA265_RS00485 0.18 -0.3 104,751 + CA265_RS00485 0.18 -1.1 104,752 - CA265_RS00485 0.18 +0.1 104,752 - CA265_RS00485 0.18 +0.4 104,792 + CA265_RS00485 0.21 -0.0 104,792 + CA265_RS00485 0.21 -0.7 104,792 + CA265_RS00485 0.21 -1.8 104,821 - CA265_RS00485 0.24 +2.0 104,908 + CA265_RS00485 0.32 -0.4 104,908 + CA265_RS00485 0.32 +0.3 104,909 - CA265_RS00485 0.32 -0.5 104,909 - CA265_RS00485 0.32 +1.4 104,910 + +1.0 104,910 + CA265_RS00485 0.32 +1.1 104,910 + CA265_RS00485 0.32 -1.1 104,911 - CA265_RS00485 0.32 +0.6 104,926 - CA265_RS00485 0.33 -1.0 104,941 - CA265_RS00485 0.35 -2.4 104,954 + CA265_RS00485 0.36 +0.4
Or see this region's nucleotide sequence