Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00390

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Thallium(I) acetate 0.001 mg/ml
86,523	+				+0.8
86,523	+				+0.6
86,524	-				+0.6
86,524	-				+0.0
86,524	-				+0.6
86,654	+				+1.2
86,654	+				+0.0
86,659	-				+0.5
86,854	+		CA265_RS00385	0.24	-0.8
86,858	+		CA265_RS00385	0.25	+0.0
86,858	+		CA265_RS00385	0.25	-0.2
86,880	-		CA265_RS00385	0.28	-1.0
86,914	-		CA265_RS00385	0.32	+0.0
86,923	-		CA265_RS00385	0.33	-0.9
86,979	-		CA265_RS00385	0.40	-0.4
86,979	-		CA265_RS00385	0.40	-0.3
86,997	+		CA265_RS00385	0.42	+0.5
87,166	+		CA265_RS00385	0.64	+0.3
87,173	+		CA265_RS00385	0.64	+1.5
87,279	+		CA265_RS00385	0.78	+0.2
87,280	-		CA265_RS00385	0.78	-0.7
87,280	-		CA265_RS00385	0.78	+1.8
87,306	-		CA265_RS00385	0.81	+0.2
87,378	+				-0.3
87,379	-				+0.0
87,447	-				-0.4
87,509	+				+0.8
87,557	+		CA265_RS00390	0.14	+0.2
87,613	+		CA265_RS00390	0.25	-0.4
87,614	-		CA265_RS00390	0.25	-1.4
87,618	-		CA265_RS00390	0.26	-2.3
87,626	-		CA265_RS00390	0.27	-0.1
87,629	-		CA265_RS00390	0.28	+0.1
87,652	+		CA265_RS00390	0.33	+2.6
87,652	+		CA265_RS00390	0.33	-0.6
87,655	+		CA265_RS00390	0.33	+0.7
87,655	+		CA265_RS00390	0.33	-1.0
87,656	-		CA265_RS00390	0.33	-0.3
87,676	-		CA265_RS00390	0.37	-0.0
87,687	+		CA265_RS00390	0.39	+0.2
87,729	+		CA265_RS00390	0.48	-1.2
87,730	-		CA265_RS00390	0.48	-0.6
87,748	-		CA265_RS00390	0.51	+0.0
87,756	+		CA265_RS00390	0.53	-0.5
87,769	-		CA265_RS00390	0.56	-0.7
87,809	+		CA265_RS00390	0.64	+1.7
87,852	-		CA265_RS00390	0.72	-0.0
87,852	-		CA265_RS00390	0.72	-1.5
87,892	-		CA265_RS00390	0.80	+0.8
87,916	-		CA265_RS00390	0.85	-0.6
87,940	-		CA265_RS00390	0.89	-0.4
88,003	+				-1.4
88,048	+				+0.4
88,158	-		CA265_RS00395	0.40	+0.7
88,173	-		CA265_RS00395	0.45	-0.3
88,199	+		CA265_RS00395	0.54	-0.1
88,227	+		CA265_RS00395	0.65	-0.9
88,317	+				-0.5
88,317	+				+0.6
88,318	-				-0.0
88,318	-				-0.5
88,341	-				+0.5
88,355	-				-0.7
88,380	-				+0.9
88,387	+				-0.2
88,388	-				-0.8
88,467	-				-0.2
88,469	-				+0.7
88,521	+				-1.0
88,553	+		CA265_RS00400	0.10	+0.2
88,553	+		CA265_RS00400	0.10	-0.9
88,561	+		CA265_RS00400	0.11	+0.6
88,660	+		CA265_RS00400	0.17	-0.7
88,662	+		CA265_RS00400	0.17	+0.5
88,663	-		CA265_RS00400	0.17	+0.4
88,680	-		CA265_RS00400	0.18	-0.2
88,680	-		CA265_RS00400	0.18	-1.1
88,680	-		CA265_RS00400	0.18	-0.1
88,683	+		CA265_RS00400	0.18	-1.3
88,738	+		CA265_RS00400	0.21	-1.3
88,770	+		CA265_RS00400	0.23	-0.3
88,807	+		CA265_RS00400	0.25	+0.7
88,811	-		CA265_RS00400	0.25	+3.0
88,842	-		CA265_RS00400	0.27	+0.5
88,896	+		CA265_RS00400	0.30	-0.1