Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00010

Experiment: R2A with Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00005 and CA265_RS00010 are separated by 133 nucleotidesCA265_RS00010 and CA265_RS00015 are separated by 39 nucleotidesCA265_RS00015 and CA265_RS00020 are separated by 85 nucleotides CA265_RS00005: CA265_RS00005 - chromosomal replication initiation protein DnaA, at 1 to 1,431 _RS00005 CA265_RS00010: CA265_RS00010 - DNA mismatch repair protein MutT, at 1,565 to 2,113 _RS00010 CA265_RS00015: CA265_RS00015 - hypothetical protein, at 2,153 to 2,542 _RS00015 CA265_RS00020: CA265_RS00020 - methanol dehydrogenase, at 2,628 to 3,401 _RS00020 Position (kb) 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 1.454 kb on + strandat 1.496 kb on - strandat 1.503 kb on + strandat 1.504 kb on - strandat 1.522 kb on - strandat 1.538 kb on - strandat 1.538 kb on - strandat 1.593 kb on + strandat 1.594 kb on - strandat 1.595 kb on + strandat 1.596 kb on - strandat 1.630 kb on + strand, within CA265_RS00010at 1.631 kb on - strand, within CA265_RS00010at 1.640 kb on - strand, within CA265_RS00010at 1.652 kb on + strand, within CA265_RS00010at 1.666 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.668 kb on + strand, within CA265_RS00010at 1.686 kb on - strand, within CA265_RS00010at 1.700 kb on + strand, within CA265_RS00010at 1.701 kb on - strand, within CA265_RS00010at 1.723 kb on + strand, within CA265_RS00010at 1.741 kb on - strand, within CA265_RS00010at 1.792 kb on + strand, within CA265_RS00010at 1.877 kb on + strand, within CA265_RS00010at 1.877 kb on + strand, within CA265_RS00010at 1.958 kb on + strand, within CA265_RS00010at 1.991 kb on + strand, within CA265_RS00010at 1.998 kb on + strand, within CA265_RS00010at 1.998 kb on + strand, within CA265_RS00010at 1.999 kb on - strand, within CA265_RS00010at 2.018 kb on - strand, within CA265_RS00010at 2.032 kb on + strand, within CA265_RS00010at 2.081 kb on - strandat 2.119 kb on + strandat 2.147 kb on - strandat 2.163 kb on + strandat 2.164 kb on - strandat 2.164 kb on - strandat 2.205 kb on - strand, within CA265_RS00015at 2.229 kb on + strand, within CA265_RS00015at 2.233 kb on + strand, within CA265_RS00015at 2.233 kb on + strand, within CA265_RS00015at 2.234 kb on - strand, within CA265_RS00015at 2.282 kb on + strand, within CA265_RS00015at 2.282 kb on + strand, within CA265_RS00015at 2.296 kb on - strand, within CA265_RS00015at 2.299 kb on - strand, within CA265_RS00015at 2.458 kb on + strand, within CA265_RS00015at 2.482 kb on + strand, within CA265_RS00015at 2.482 kb on + strand, within CA265_RS00015at 2.538 kb on + strandat 2.539 kb on - strandat 2.594 kb on - strandat 2.601 kb on - strandat 2.605 kb on + strandat 2.605 kb on + strandat 2.803 kb on - strand, within CA265_RS00020at 2.829 kb on - strand, within CA265_RS00020at 2.834 kb on + strand, within CA265_RS00020at 2.864 kb on + strand, within CA265_RS00020at 2.865 kb on - strand, within CA265_RS00020at 2.876 kb on + strand, within CA265_RS00020at 3.008 kb on + strand, within CA265_RS00020at 3.009 kb on - strand, within CA265_RS00020at 3.041 kb on + strand, within CA265_RS00020at 3.042 kb on - strand, within CA265_RS00020

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Thallium(I) acetate 0.001 mg/ml
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1,454 + +0.0
1,496 - +0.4
1,503 + -0.3
1,504 - +0.1
1,522 - -0.4
1,538 - +1.1
1,538 - +0.6
1,593 + +0.5
1,594 - -0.5
1,595 + +0.5
1,596 - +0.1
1,630 + CA265_RS00010 0.12 -1.0
1,631 - CA265_RS00010 0.12 +0.0
1,640 - CA265_RS00010 0.14 -0.7
1,652 + CA265_RS00010 0.16 -0.1
1,666 + CA265_RS00010 0.18 +0.2
1,668 + CA265_RS00010 0.19 -0.0
1,668 + CA265_RS00010 0.19 +0.3
1,668 + CA265_RS00010 0.19 -0.3
1,686 - CA265_RS00010 0.22 +0.8
1,700 + CA265_RS00010 0.25 +0.5
1,701 - CA265_RS00010 0.25 +1.8
1,723 + CA265_RS00010 0.29 +1.6
1,741 - CA265_RS00010 0.32 +1.1
1,792 + CA265_RS00010 0.41 -1.0
1,877 + CA265_RS00010 0.57 +0.8
1,877 + CA265_RS00010 0.57 +1.7
1,958 + CA265_RS00010 0.72 +1.0
1,991 + CA265_RS00010 0.78 +0.3
1,998 + CA265_RS00010 0.79 +0.8
1,998 + CA265_RS00010 0.79 +0.2
1,999 - CA265_RS00010 0.79 +0.7
2,018 - CA265_RS00010 0.83 -0.4
2,032 + CA265_RS00010 0.85 -0.5
2,081 - +1.4
2,119 + -0.2
2,147 - +0.8
2,163 + +0.1
2,164 - -0.3
2,164 - -0.6
2,205 - CA265_RS00015 0.13 -0.1
2,229 + CA265_RS00015 0.19 -1.0
2,233 + CA265_RS00015 0.21 +2.1
2,233 + CA265_RS00015 0.21 +0.4
2,234 - CA265_RS00015 0.21 +1.4
2,282 + CA265_RS00015 0.33 +1.2
2,282 + CA265_RS00015 0.33 +1.7
2,296 - CA265_RS00015 0.37 +0.4
2,299 - CA265_RS00015 0.37 +0.6
2,458 + CA265_RS00015 0.78 -0.4
2,482 + CA265_RS00015 0.84 +0.1
2,482 + CA265_RS00015 0.84 -0.1
2,538 + -0.2
2,539 - +0.5
2,594 - +0.1
2,601 - -0.6
2,605 + +0.4
2,605 + -0.4
2,803 - CA265_RS00020 0.23 +0.8
2,829 - CA265_RS00020 0.26 -1.1
2,834 + CA265_RS00020 0.27 +0.0
2,864 + CA265_RS00020 0.30 +0.5
2,865 - CA265_RS00020 0.31 -0.6
2,876 + CA265_RS00020 0.32 +0.2
3,008 + CA265_RS00020 0.49 +0.8
3,009 - CA265_RS00020 0.49 -0.3
3,041 + CA265_RS00020 0.53 -0.4
3,042 - CA265_RS00020 0.53 +0.7

Or see this region's nucleotide sequence