Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24135

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_24130 and AO356_24135 are separated by 433 nucleotidesAO356_24135 and AO356_24140 are separated by 155 nucleotides AO356_24130: AO356_24130 - NADPH-dependent FMN reductase, at 5,411,616 to 5,412,350 _24130 AO356_24135: AO356_24135 - hypothetical protein, at 5,412,784 to 5,413,722 _24135 AO356_24140: AO356_24140 - hypothetical protein, at 5,413,878 to 5,414,513 _24140 Position (kb) 5412 5413 5414Strain fitness (log2 ratio) -2 -1 0 1 2at 5412.075 kb on + strand, within AO356_24130at 5412.075 kb on + strand, within AO356_24130at 5412.221 kb on - strand, within AO356_24130at 5412.221 kb on - strand, within AO356_24130at 5412.225 kb on + strand, within AO356_24130at 5412.225 kb on + strand, within AO356_24130at 5412.225 kb on + strand, within AO356_24130at 5412.226 kb on - strand, within AO356_24130at 5412.226 kb on - strand, within AO356_24130at 5412.232 kb on - strand, within AO356_24130at 5412.232 kb on - strand, within AO356_24130at 5412.285 kb on + strandat 5412.285 kb on + strandat 5412.286 kb on - strandat 5412.286 kb on - strandat 5412.379 kb on - strandat 5412.379 kb on - strandat 5412.598 kb on + strandat 5412.599 kb on - strandat 5412.660 kb on + strandat 5412.660 kb on + strandat 5412.660 kb on + strandat 5412.660 kb on + strandat 5412.660 kb on + strandat 5412.661 kb on - strandat 5412.719 kb on + strandat 5412.720 kb on - strandat 5412.720 kb on - strandat 5412.728 kb on + strandat 5412.782 kb on + strandat 5412.962 kb on + strand, within AO356_24135at 5412.963 kb on - strand, within AO356_24135at 5412.963 kb on - strand, within AO356_24135at 5413.008 kb on - strand, within AO356_24135at 5413.008 kb on - strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.039 kb on + strand, within AO356_24135at 5413.040 kb on - strand, within AO356_24135at 5413.040 kb on - strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.041 kb on + strand, within AO356_24135at 5413.042 kb on - strand, within AO356_24135at 5413.042 kb on - strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.045 kb on + strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.046 kb on - strand, within AO356_24135at 5413.236 kb on + strand, within AO356_24135at 5413.335 kb on - strand, within AO356_24135at 5413.366 kb on + strand, within AO356_24135at 5413.606 kb on + strand, within AO356_24135at 5413.746 kb on + strandat 5413.775 kb on + strandat 5413.828 kb on + strandat 5413.828 kb on + strandat 5413.828 kb on + strandat 5413.829 kb on - strandat 5413.829 kb on - strandat 5413.831 kb on - strandat 5413.831 kb on - strandat 5413.840 kb on - strandat 5413.864 kb on - strandat 5413.864 kb on - strandat 5413.910 kb on + strandat 5413.918 kb on + strandat 5413.990 kb on + strand, within AO356_24140at 5413.999 kb on + strand, within AO356_24140at 5413.999 kb on + strand, within AO356_24140at 5414.000 kb on - strand, within AO356_24140at 5414.000 kb on - strand, within AO356_24140at 5414.089 kb on + strand, within AO356_24140at 5414.090 kb on - strand, within AO356_24140at 5414.093 kb on - strand, within AO356_24140at 5414.093 kb on - strand, within AO356_24140at 5414.239 kb on + strand, within AO356_24140at 5414.475 kb on + strandat 5414.518 kb on - strandat 5414.564 kb on + strandat 5414.573 kb on + strandat 5414.610 kb on + strandat 5414.610 kb on + strandat 5414.611 kb on - strandat 5414.611 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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5,412,075 + AO356_24130 0.62 +0.3
5,412,075 + AO356_24130 0.62 -1.4
5,412,221 - AO356_24130 0.82 -0.4
5,412,221 - AO356_24130 0.82 +0.8
5,412,225 + AO356_24130 0.83 -1.6
5,412,225 + AO356_24130 0.83 -0.8
5,412,225 + AO356_24130 0.83 -0.8
5,412,226 - AO356_24130 0.83 +0.4
5,412,226 - AO356_24130 0.83 -0.7
5,412,232 - AO356_24130 0.84 -0.7
5,412,232 - AO356_24130 0.84 +0.2
5,412,285 + -0.3
5,412,285 + -0.3
5,412,286 - -1.0
5,412,286 - -0.0
5,412,379 - -1.3
5,412,379 - +0.4
5,412,598 + -0.4
5,412,599 - -0.0
5,412,660 + -0.0
5,412,660 + +0.6
5,412,660 + -0.2
5,412,660 + -0.2
5,412,660 + -0.5
5,412,661 - -0.3
5,412,719 + -0.2
5,412,720 - -0.6
5,412,720 - -0.0
5,412,728 + -0.0
5,412,782 + +0.5
5,412,962 + AO356_24135 0.19 +0.4
5,412,963 - AO356_24135 0.19 -0.2
5,412,963 - AO356_24135 0.19 -0.6
5,413,008 - AO356_24135 0.24 +0.3
5,413,008 - AO356_24135 0.24 +1.1
5,413,039 + AO356_24135 0.27 +0.2
5,413,039 + AO356_24135 0.27 -0.1
5,413,039 + AO356_24135 0.27 +0.3
5,413,040 - AO356_24135 0.27 -0.5
5,413,040 - AO356_24135 0.27 +0.6
5,413,041 + AO356_24135 0.27 +0.8
5,413,041 + AO356_24135 0.27 -2.0
5,413,041 + AO356_24135 0.27 -0.2
5,413,041 + AO356_24135 0.27 -0.2
5,413,041 + AO356_24135 0.27 -0.4
5,413,041 + AO356_24135 0.27 +0.4
5,413,041 + AO356_24135 0.27 +1.3
5,413,042 - AO356_24135 0.27 +0.1
5,413,042 - AO356_24135 0.27 -0.0
5,413,045 + AO356_24135 0.28 +0.6
5,413,045 + AO356_24135 0.28 -0.0
5,413,045 + AO356_24135 0.28 -0.7
5,413,046 - AO356_24135 0.28 +0.5
5,413,046 - AO356_24135 0.28 -0.8
5,413,046 - AO356_24135 0.28 -0.0
5,413,046 - AO356_24135 0.28 +0.2
5,413,046 - AO356_24135 0.28 +1.0
5,413,236 + AO356_24135 0.48 +0.8
5,413,335 - AO356_24135 0.59 +1.2
5,413,366 + AO356_24135 0.62 +2.3
5,413,606 + AO356_24135 0.88 -0.2
5,413,746 + +0.6
5,413,775 + +0.5
5,413,828 + +1.8
5,413,828 + +1.0
5,413,828 + -1.6
5,413,829 - -0.1
5,413,829 - -0.3
5,413,831 - +0.5
5,413,831 - +0.4
5,413,840 - -0.4
5,413,864 - -1.4
5,413,864 - -0.4
5,413,910 + -1.1
5,413,918 + -0.7
5,413,990 + AO356_24140 0.18 +0.2
5,413,999 + AO356_24140 0.19 -1.5
5,413,999 + AO356_24140 0.19 -0.4
5,414,000 - AO356_24140 0.19 -0.0
5,414,000 - AO356_24140 0.19 -0.5
5,414,089 + AO356_24140 0.33 +1.0
5,414,090 - AO356_24140 0.33 -0.0
5,414,093 - AO356_24140 0.34 +0.1
5,414,093 - AO356_24140 0.34 +0.7
5,414,239 + AO356_24140 0.57 -0.3
5,414,475 + +1.1
5,414,518 - +0.7
5,414,564 + +0.1
5,414,573 + -1.1
5,414,610 + +0.2
5,414,610 + +0.0
5,414,611 - -1.0
5,414,611 - +0.1

Or see this region's nucleotide sequence