Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_09175 and AO356_09180 overlap by 8 nucleotides AO356_09180 and AO356_09185 overlap by 4 nucleotides AO356_09185 and AO356_09190 overlap by 17 nucleotides
AO356_09175: AO356_09175 - histidine ammonia-lyase, at 2,074,568 to 2,076,112
_09175
AO356_09180: AO356_09180 - thioesterase, at 2,076,105 to 2,076,530
_09180
AO356_09185: AO356_09185 - hypothetical protein, at 2,076,527 to 2,077,120
_09185
AO356_09190: AO356_09190 - hypothetical protein, at 2,077,104 to 2,079,443
_09190
Position (kb)
2076
2077
2078 Strain fitness (log2 ratio)
-2
-1
0
1 at 2075.578 kb on + strand, within AO356_09175 at 2075.670 kb on - strand, within AO356_09175 at 2075.670 kb on - strand, within AO356_09175 at 2076.195 kb on + strand, within AO356_09180 at 2076.196 kb on - strand, within AO356_09180 at 2076.196 kb on - strand, within AO356_09180 at 2076.204 kb on + strand, within AO356_09180 at 2076.204 kb on + strand, within AO356_09180 at 2076.205 kb on - strand, within AO356_09180 at 2076.252 kb on + strand, within AO356_09180 at 2076.253 kb on - strand, within AO356_09180 at 2076.310 kb on - strand, within AO356_09180 at 2076.390 kb on + strand, within AO356_09180 at 2076.390 kb on + strand, within AO356_09180 at 2076.759 kb on - strand, within AO356_09185 at 2077.434 kb on - strand, within AO356_09190 at 2077.525 kb on + strand, within AO356_09190 at 2077.526 kb on - strand, within AO356_09190 at 2078.073 kb on + strand, within AO356_09190 at 2078.073 kb on + strand, within AO356_09190 at 2078.074 kb on - strand, within AO356_09190 at 2078.074 kb on - strand, within AO356_09190 at 2078.074 kb on - strand, within AO356_09190 at 2078.074 kb on - strand, within AO356_09190 at 2078.074 kb on - strand, within AO356_09190
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,075,578 + AO356_09175 0.65 +0.1 2,075,670 - AO356_09175 0.71 -0.2 2,075,670 - AO356_09175 0.71 -0.8 2,076,195 + AO356_09180 0.21 +0.2 2,076,196 - AO356_09180 0.21 -0.9 2,076,196 - AO356_09180 0.21 +0.0 2,076,204 + AO356_09180 0.23 -0.1 2,076,204 + AO356_09180 0.23 -1.0 2,076,205 - AO356_09180 0.23 -0.6 2,076,252 + AO356_09180 0.35 -0.3 2,076,253 - AO356_09180 0.35 -1.9 2,076,310 - AO356_09180 0.48 -1.0 2,076,390 + AO356_09180 0.67 -0.7 2,076,390 + AO356_09180 0.67 -2.4 2,076,759 - AO356_09185 0.39 -0.6 2,077,434 - AO356_09190 0.14 -1.2 2,077,525 + AO356_09190 0.18 +0.6 2,077,526 - AO356_09190 0.18 -1.7 2,078,073 + AO356_09190 0.41 +0.6 2,078,073 + AO356_09190 0.41 +0.1 2,078,074 - AO356_09190 0.41 -0.5 2,078,074 - AO356_09190 0.41 +0.2 2,078,074 - AO356_09190 0.41 -1.5 2,078,074 - AO356_09190 0.41 +0.5 2,078,074 - AO356_09190 0.41 -0.6
Or see this region's nucleotide sequence