Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09185

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_09175 and AO356_09180 overlap by 8 nucleotidesAO356_09180 and AO356_09185 overlap by 4 nucleotidesAO356_09185 and AO356_09190 overlap by 17 nucleotides AO356_09175: AO356_09175 - histidine ammonia-lyase, at 2,074,568 to 2,076,112 _09175 AO356_09180: AO356_09180 - thioesterase, at 2,076,105 to 2,076,530 _09180 AO356_09185: AO356_09185 - hypothetical protein, at 2,076,527 to 2,077,120 _09185 AO356_09190: AO356_09190 - hypothetical protein, at 2,077,104 to 2,079,443 _09190 Position (kb) 2076 2077 2078Strain fitness (log2 ratio) -2 -1 0 1at 2075.578 kb on + strand, within AO356_09175at 2075.670 kb on - strand, within AO356_09175at 2075.670 kb on - strand, within AO356_09175at 2076.195 kb on + strand, within AO356_09180at 2076.196 kb on - strand, within AO356_09180at 2076.196 kb on - strand, within AO356_09180at 2076.204 kb on + strand, within AO356_09180at 2076.204 kb on + strand, within AO356_09180at 2076.205 kb on - strand, within AO356_09180at 2076.252 kb on + strand, within AO356_09180at 2076.253 kb on - strand, within AO356_09180at 2076.310 kb on - strand, within AO356_09180at 2076.390 kb on + strand, within AO356_09180at 2076.390 kb on + strand, within AO356_09180at 2076.759 kb on - strand, within AO356_09185at 2077.434 kb on - strand, within AO356_09190at 2077.525 kb on + strand, within AO356_09190at 2077.526 kb on - strand, within AO356_09190at 2078.073 kb on + strand, within AO356_09190at 2078.073 kb on + strand, within AO356_09190at 2078.074 kb on - strand, within AO356_09190at 2078.074 kb on - strand, within AO356_09190at 2078.074 kb on - strand, within AO356_09190at 2078.074 kb on - strand, within AO356_09190at 2078.074 kb on - strand, within AO356_09190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
2,075,578 + AO356_09175 0.65 +0.1
2,075,670 - AO356_09175 0.71 -0.2
2,075,670 - AO356_09175 0.71 -0.8
2,076,195 + AO356_09180 0.21 +0.2
2,076,196 - AO356_09180 0.21 -0.9
2,076,196 - AO356_09180 0.21 +0.0
2,076,204 + AO356_09180 0.23 -0.1
2,076,204 + AO356_09180 0.23 -1.0
2,076,205 - AO356_09180 0.23 -0.6
2,076,252 + AO356_09180 0.35 -0.3
2,076,253 - AO356_09180 0.35 -1.9
2,076,310 - AO356_09180 0.48 -1.0
2,076,390 + AO356_09180 0.67 -0.7
2,076,390 + AO356_09180 0.67 -2.4
2,076,759 - AO356_09185 0.39 -0.6
2,077,434 - AO356_09190 0.14 -1.2
2,077,525 + AO356_09190 0.18 +0.6
2,077,526 - AO356_09190 0.18 -1.7
2,078,073 + AO356_09190 0.41 +0.6
2,078,073 + AO356_09190 0.41 +0.1
2,078,074 - AO356_09190 0.41 -0.5
2,078,074 - AO356_09190 0.41 +0.2
2,078,074 - AO356_09190 0.41 -1.5
2,078,074 - AO356_09190 0.41 +0.5
2,078,074 - AO356_09190 0.41 -0.6

Or see this region's nucleotide sequence