Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03040

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03025 and AO356_03030 are separated by 2 nucleotidesAO356_03030 and AO356_03035 overlap by 4 nucleotidesAO356_03035 and AO356_03040 are separated by 126 nucleotidesAO356_03040 and AO356_03045 are separated by 492 nucleotides AO356_03025: AO356_03025 - hypothetical protein, at 674,701 to 675,015 _03025 AO356_03030: AO356_03030 - hypothetical protein, at 675,018 to 675,407 _03030 AO356_03035: AO356_03035 - hypothetical protein, at 675,404 to 675,739 _03035 AO356_03040: AO356_03040 - deoxyguanosinetriphosphate triphosphohydrolase, at 675,866 to 677,194 _03040 AO356_03045: AO356_03045 - LuxR family transcriptional regulator, at 677,687 to 678,313 _03045 Position (kb) 675 676 677 678Strain fitness (log2 ratio) -2 -1 0 1 2at 674.915 kb on + strand, within AO356_03025at 674.915 kb on + strand, within AO356_03025at 674.916 kb on - strand, within AO356_03025at 674.932 kb on + strand, within AO356_03025at 674.932 kb on + strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.933 kb on - strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.936 kb on + strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.937 kb on - strand, within AO356_03025at 674.960 kb on + strand, within AO356_03025at 674.961 kb on - strand, within AO356_03025at 675.241 kb on + strand, within AO356_03030at 675.252 kb on + strand, within AO356_03030at 675.252 kb on + strand, within AO356_03030at 675.253 kb on - strand, within AO356_03030at 675.288 kb on + strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.289 kb on - strand, within AO356_03030at 675.336 kb on + strand, within AO356_03030at 675.336 kb on + strand, within AO356_03030at 675.337 kb on - strand, within AO356_03030at 675.337 kb on - strand, within AO356_03030at 675.418 kb on + strandat 675.418 kb on + strandat 675.772 kb on + strandat 675.772 kb on + strandat 675.772 kb on + strandat 675.773 kb on - strandat 675.773 kb on - strandat 675.773 kb on - strandat 675.773 kb on - strandat 675.773 kb on - strandat 675.776 kb on + strandat 675.776 kb on + strandat 675.776 kb on + strandat 675.777 kb on - strandat 675.777 kb on - strandat 675.797 kb on + strandat 675.831 kb on + strandat 675.877 kb on + strandat 676.235 kb on + strand, within AO356_03040at 676.355 kb on + strand, within AO356_03040at 676.355 kb on + strand, within AO356_03040at 676.356 kb on - strand, within AO356_03040at 676.356 kb on - strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.388 kb on + strand, within AO356_03040at 676.389 kb on - strand, within AO356_03040at 676.389 kb on - strand, within AO356_03040at 676.389 kb on - strand, within AO356_03040at 676.389 kb on - strand, within AO356_03040at 676.402 kb on + strand, within AO356_03040at 676.402 kb on + strand, within AO356_03040at 676.403 kb on - strand, within AO356_03040at 676.403 kb on - strand, within AO356_03040at 676.406 kb on + strand, within AO356_03040at 676.406 kb on + strand, within AO356_03040at 676.406 kb on + strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.407 kb on - strand, within AO356_03040at 676.415 kb on + strand, within AO356_03040at 676.415 kb on + strand, within AO356_03040at 676.568 kb on + strand, within AO356_03040at 676.568 kb on + strand, within AO356_03040at 676.569 kb on - strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.958 kb on + strand, within AO356_03040at 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.348 kb on - strandat 677.385 kb on - strandat 677.411 kb on - strandat 677.411 kb on - strandat 677.418 kb on + strandat 677.424 kb on + strandat 677.447 kb on - strandat 677.524 kb on + strandat 677.525 kb on - strandat 677.554 kb on - strandat 677.647 kb on - strandat 677.678 kb on - strandat 677.762 kb on + strand, within AO356_03045at 677.763 kb on - strand, within AO356_03045at 677.764 kb on + strand, within AO356_03045at 677.765 kb on - strand, within AO356_03045at 677.765 kb on - strand, within AO356_03045at 677.984 kb on + strand, within AO356_03045at 677.985 kb on - strand, within AO356_03045at 678.050 kb on - strand, within AO356_03045at 678.053 kb on + strand, within AO356_03045at 678.053 kb on + strand, within AO356_03045at 678.054 kb on - strand, within AO356_03045at 678.106 kb on - strand, within AO356_03045at 678.106 kb on - strand, within AO356_03045at 678.190 kb on - strand, within AO356_03045

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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674,915 + AO356_03025 0.68 +0.0
674,915 + AO356_03025 0.68 +0.7
674,916 - AO356_03025 0.68 -1.6
674,932 + AO356_03025 0.73 -0.1
674,932 + AO356_03025 0.73 +0.2
674,933 - AO356_03025 0.74 -0.9
674,933 - AO356_03025 0.74 -0.1
674,933 - AO356_03025 0.74 -0.1
674,933 - AO356_03025 0.74 -0.3
674,936 + AO356_03025 0.75 -1.1
674,936 + AO356_03025 0.75 +2.1
674,936 + AO356_03025 0.75 -0.1
674,936 + AO356_03025 0.75 +0.7
674,936 + AO356_03025 0.75 -0.2
674,937 - AO356_03025 0.75 -0.5
674,937 - AO356_03025 0.75 +0.1
674,937 - AO356_03025 0.75 -0.5
674,960 + AO356_03025 0.82 -0.8
674,961 - AO356_03025 0.83 +0.4
675,241 + AO356_03030 0.57 +0.8
675,252 + AO356_03030 0.60 +0.3
675,252 + AO356_03030 0.60 +0.3
675,253 - AO356_03030 0.60 +0.8
675,288 + AO356_03030 0.69 +0.0
675,289 - AO356_03030 0.69 +0.7
675,289 - AO356_03030 0.69 +1.0
675,289 - AO356_03030 0.69 -0.4
675,336 + AO356_03030 0.82 +0.4
675,336 + AO356_03030 0.82 +0.5
675,337 - AO356_03030 0.82 -0.2
675,337 - AO356_03030 0.82 +0.7
675,418 + -0.0
675,418 + -0.6
675,772 + -0.3
675,772 + +0.3
675,772 + -0.1
675,773 - -0.6
675,773 - +0.2
675,773 - -0.2
675,773 - +0.5
675,773 - -0.0
675,776 + -0.6
675,776 + -0.4
675,776 + -0.6
675,777 - -0.4
675,777 - +0.0
675,797 + -0.6
675,831 + +0.5
675,877 + +0.6
676,235 + AO356_03040 0.28 +0.1
676,355 + AO356_03040 0.37 +0.0
676,355 + AO356_03040 0.37 +0.6
676,356 - AO356_03040 0.37 +1.0
676,356 - AO356_03040 0.37 -0.8
676,388 + AO356_03040 0.39 +0.7
676,388 + AO356_03040 0.39 -1.1
676,388 + AO356_03040 0.39 -1.4
676,388 + AO356_03040 0.39 -0.2
676,388 + AO356_03040 0.39 +1.3
676,388 + AO356_03040 0.39 +0.4
676,389 - AO356_03040 0.39 +1.6
676,389 - AO356_03040 0.39 +0.2
676,389 - AO356_03040 0.39 +0.6
676,389 - AO356_03040 0.39 -0.0
676,402 + AO356_03040 0.40 -1.5
676,402 + AO356_03040 0.40 -2.0
676,403 - AO356_03040 0.40 +0.2
676,403 - AO356_03040 0.40 -0.0
676,406 + AO356_03040 0.41 -0.7
676,406 + AO356_03040 0.41 +0.9
676,406 + AO356_03040 0.41 +0.5
676,407 - AO356_03040 0.41 -0.2
676,407 - AO356_03040 0.41 -0.5
676,407 - AO356_03040 0.41 -0.6
676,407 - AO356_03040 0.41 +0.4
676,407 - AO356_03040 0.41 +0.0
676,407 - AO356_03040 0.41 -0.8
676,407 - AO356_03040 0.41 -0.6
676,407 - AO356_03040 0.41 +0.7
676,415 + AO356_03040 0.41 +0.8
676,415 + AO356_03040 0.41 -0.3
676,568 + AO356_03040 0.53 +0.8
676,568 + AO356_03040 0.53 +0.0
676,569 - AO356_03040 0.53 -1.0
676,858 + AO356_03040 0.75 -0.3
676,858 + AO356_03040 0.75 +0.8
676,858 + AO356_03040 0.75 +1.9
676,858 + AO356_03040 0.75 +0.6
676,858 + AO356_03040 0.75 +2.1
676,858 + AO356_03040 0.75 +1.6
676,858 + AO356_03040 0.75 -0.2
676,859 - AO356_03040 0.75 +0.5
676,859 - AO356_03040 0.75 +0.6
676,859 - AO356_03040 0.75 -0.3
676,859 - AO356_03040 0.75 +0.6
676,859 - AO356_03040 0.75 -0.1
676,859 - AO356_03040 0.75 +0.5
676,859 - AO356_03040 0.75 +0.5
676,859 - AO356_03040 0.75 -0.1
676,859 - AO356_03040 0.75 +1.9
676,859 - AO356_03040 0.75 -0.0
676,859 - AO356_03040 0.75 -0.2
676,859 - AO356_03040 0.75 -0.3
676,859 - AO356_03040 0.75 +0.0
676,859 - AO356_03040 0.75 +0.5
676,859 - AO356_03040 0.75 +0.1
676,859 - AO356_03040 0.75 +1.1
676,859 - AO356_03040 0.75 +1.0
676,859 - AO356_03040 0.75 -0.8
676,958 + AO356_03040 0.82 +0.0
677,147 + +0.5
677,147 + +0.8
677,147 + +0.0
677,147 + +1.9
677,147 + +1.5
677,348 - -0.1
677,385 - -0.2
677,411 - +0.1
677,411 - +0.0
677,418 + +2.4
677,424 + +1.6
677,447 - +1.4
677,524 + -0.5
677,525 - +1.1
677,554 - +1.0
677,647 - +0.1
677,678 - -0.1
677,762 + AO356_03045 0.12 +1.5
677,763 - AO356_03045 0.12 -0.4
677,764 + AO356_03045 0.12 +0.8
677,765 - AO356_03045 0.12 +0.7
677,765 - AO356_03045 0.12 +0.2
677,984 + AO356_03045 0.47 +0.3
677,985 - AO356_03045 0.48 +1.7
678,050 - AO356_03045 0.58 +0.2
678,053 + AO356_03045 0.58 +0.8
678,053 + AO356_03045 0.58 +0.4
678,054 - AO356_03045 0.59 +0.7
678,106 - AO356_03045 0.67 +0.0
678,106 - AO356_03045 0.67 +0.7
678,190 - AO356_03045 0.80 +0.6

Or see this region's nucleotide sequence