Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01810

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01805 and AO356_01810 overlap by 4 nucleotidesAO356_01810 and AO356_01815 are separated by 281 nucleotides AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599 _01805 AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756 _01810 AO356_01815: AO356_01815 - serine/threonine protein kinase, at 406,038 to 407,270 _01815 Position (kb) 404 405 406Strain fitness (log2 ratio) -2 -1 0 1at 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.628 kb on + strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.629 kb on - strandat 403.713 kb on - strandat 403.713 kb on - strandat 403.727 kb on + strandat 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.832 kb on + strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.833 kb on - strand, within AO356_01805at 403.834 kb on + strand, within AO356_01805at 403.835 kb on - strand, within AO356_01805at 403.905 kb on - strand, within AO356_01805at 404.025 kb on - strand, within AO356_01805at 404.466 kb on - strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.472 kb on + strand, within AO356_01805at 404.513 kb on + strandat 404.513 kb on + strandat 404.514 kb on - strandat 404.597 kb on + strandat 404.598 kb on - strandat 404.598 kb on - strandat 404.598 kb on - strandat 405.007 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.092 kb on + strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.093 kb on - strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.098 kb on + strand, within AO356_01810at 405.099 kb on - strand, within AO356_01810at 405.227 kb on + strand, within AO356_01810at 405.228 kb on - strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.231 kb on + strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810at 405.232 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.610 kb on - strand, within AO356_01810at 405.718 kb on - strandat 405.834 kb on + strandat 405.834 kb on + strandat 405.835 kb on - strandat 405.835 kb on - strandat 405.853 kb on + strandat 405.853 kb on + strandat 405.854 kb on - strandat 405.877 kb on + strandat 405.926 kb on + strandat 405.952 kb on - strandat 406.019 kb on + strandat 406.020 kb on - strandat 406.020 kb on - strandat 406.296 kb on + strand, within AO356_01815at 406.297 kb on - strand, within AO356_01815at 406.343 kb on + strand, within AO356_01815at 406.343 kb on + strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.344 kb on - strand, within AO356_01815at 406.547 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.696 kb on + strand, within AO356_01815at 406.697 kb on - strand, within AO356_01815

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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403,628 + +0.3
403,628 + +0.3
403,628 + +1.1
403,628 + -1.4
403,628 + +0.4
403,628 + +0.4
403,628 + -0.0
403,628 + +0.3
403,628 + +0.8
403,628 + -0.0
403,628 + +0.9
403,628 + -0.6
403,628 + -0.3
403,629 - -0.5
403,629 - -0.1
403,629 - -1.9
403,629 - +0.0
403,713 - -0.3
403,713 - -0.2
403,727 + +0.4
403,832 + AO356_01805 0.14 +1.1
403,832 + AO356_01805 0.14 -2.1
403,832 + AO356_01805 0.14 +0.3
403,832 + AO356_01805 0.14 +0.0
403,832 + AO356_01805 0.14 -0.6
403,832 + AO356_01805 0.14 -0.3
403,832 + AO356_01805 0.14 -0.9
403,832 + AO356_01805 0.14 -0.5
403,833 - AO356_01805 0.14 -0.5
403,833 - AO356_01805 0.14 +0.9
403,833 - AO356_01805 0.14 -0.3
403,833 - AO356_01805 0.14 -0.7
403,833 - AO356_01805 0.14 -0.2
403,834 + AO356_01805 0.15 +0.6
403,835 - AO356_01805 0.15 -0.4
403,905 - AO356_01805 0.23 +0.4
404,025 - AO356_01805 0.36 +0.1
404,466 - AO356_01805 0.85 -0.5
404,472 + AO356_01805 0.86 +0.4
404,472 + AO356_01805 0.86 +0.0
404,513 + -0.4
404,513 + -0.0
404,514 - -0.1
404,597 + -0.1
404,598 - +1.4
404,598 - +0.0
404,598 - +0.6
405,007 + AO356_01810 0.35 +0.3
405,092 + AO356_01810 0.43 +0.3
405,092 + AO356_01810 0.43 +0.3
405,092 + AO356_01810 0.43 +0.1
405,093 - AO356_01810 0.43 +0.3
405,093 - AO356_01810 0.43 +0.4
405,093 - AO356_01810 0.43 +0.1
405,093 - AO356_01810 0.43 +0.3
405,093 - AO356_01810 0.43 -0.7
405,093 - AO356_01810 0.43 +0.7
405,098 + AO356_01810 0.43 -0.7
405,098 + AO356_01810 0.43 -0.3
405,098 + AO356_01810 0.43 -0.9
405,099 - AO356_01810 0.43 -0.4
405,227 + AO356_01810 0.54 +0.1
405,228 - AO356_01810 0.54 -0.3
405,231 + AO356_01810 0.55 -0.6
405,231 + AO356_01810 0.55 +0.1
405,231 + AO356_01810 0.55 -0.5
405,232 - AO356_01810 0.55 -0.2
405,232 - AO356_01810 0.55 +0.2
405,610 - AO356_01810 0.87 -0.9
405,610 - AO356_01810 0.87 -0.4
405,610 - AO356_01810 0.87 +0.5
405,718 - +1.6
405,834 + -0.4
405,834 + +0.0
405,835 - -1.2
405,835 - -1.1
405,853 + +0.8
405,853 + +0.1
405,854 - +0.3
405,877 + +0.1
405,926 + -0.0
405,952 - +0.4
406,019 + +1.6
406,020 - +0.3
406,020 - -2.1
406,296 + AO356_01815 0.21 +0.1
406,297 - AO356_01815 0.21 -0.1
406,343 + AO356_01815 0.25 -0.4
406,343 + AO356_01815 0.25 -0.1
406,344 - AO356_01815 0.25 +0.4
406,344 - AO356_01815 0.25 -1.6
406,344 - AO356_01815 0.25 -0.5
406,547 + AO356_01815 0.41 +0.5
406,696 + AO356_01815 0.53 +0.6
406,696 + AO356_01815 0.53 -0.0
406,696 + AO356_01815 0.53 -0.2
406,696 + AO356_01815 0.53 +0.4
406,697 - AO356_01815 0.53 -0.1

Or see this region's nucleotide sequence