Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004217 and ABIE53_004218 are separated by 22 nucleotides ABIE53_004218 and ABIE53_004219 are separated by 70 nucleotides ABIE53_004219 and ABIE53_004220 are separated by 345 nucleotides
ABIE53_004217: ABIE53_004217 - LysR family glycine cleavage system transcriptional activator, at 392,121 to 393,089
_004217
ABIE53_004218: ABIE53_004218 - 4-oxalocrotonate tautomerase, at 393,112 to 393,366
_004218
ABIE53_004219: ABIE53_004219 - NAD(P)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family), at 393,437 to 394,147
_004219
ABIE53_004220: ABIE53_004220 - membrane protein, at 394,493 to 395,431
_004220
Position (kb) 393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 392.461 kb on + strand, within ABIE53_004217 at 392.538 kb on + strand, within ABIE53_004217 at 392.538 kb on + strand, within ABIE53_004217 at 392.538 kb on + strand, within ABIE53_004217 at 392.539 kb on - strand, within ABIE53_004217 at 392.547 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.742 kb on + strand, within ABIE53_004217 at 392.743 kb on - strand, within ABIE53_004217 at 392.743 kb on - strand, within ABIE53_004217 at 392.743 kb on - strand, within ABIE53_004217 at 392.764 kb on + strand, within ABIE53_004217 at 392.764 kb on + strand, within ABIE53_004217 at 392.765 kb on - strand, within ABIE53_004217 at 392.765 kb on - strand, within ABIE53_004217 at 392.886 kb on - strand, within ABIE53_004217 at 392.892 kb on - strand, within ABIE53_004217 at 393.001 kb on - strand at 393.001 kb on - strand at 393.003 kb on + strand at 393.003 kb on + strand at 393.003 kb on + strand at 393.003 kb on + strand at 393.003 kb on + strand at 393.004 kb on - strand at 393.014 kb on + strand at 393.014 kb on + strand at 393.014 kb on + strand at 393.015 kb on - strand at 393.015 kb on - strand at 393.015 kb on - strand at 393.015 kb on - strand at 393.015 kb on - strand at 393.103 kb on + strand at 393.103 kb on + strand at 393.104 kb on - strand at 393.106 kb on + strand at 393.107 kb on - strand at 393.107 kb on - strand at 393.107 kb on - strand at 393.114 kb on - strand at 393.196 kb on - strand, within ABIE53_004218 at 393.196 kb on - strand, within ABIE53_004218 at 393.262 kb on + strand, within ABIE53_004218 at 393.262 kb on + strand, within ABIE53_004218 at 393.262 kb on + strand, within ABIE53_004218 at 393.262 kb on + strand, within ABIE53_004218 at 393.262 kb on + strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.263 kb on - strand, within ABIE53_004218 at 393.360 kb on + strand at 393.426 kb on - strand at 393.507 kb on + strand at 393.507 kb on + strand at 393.508 kb on - strand, within ABIE53_004219 at 393.544 kb on + strand, within ABIE53_004219 at 393.545 kb on - strand, within ABIE53_004219 at 393.545 kb on - strand, within ABIE53_004219 at 393.817 kb on + strand, within ABIE53_004219 at 393.817 kb on + strand, within ABIE53_004219 at 393.818 kb on - strand, within ABIE53_004219 at 393.858 kb on + strand, within ABIE53_004219 at 393.859 kb on - strand, within ABIE53_004219 at 393.871 kb on + strand, within ABIE53_004219 at 393.871 kb on + strand, within ABIE53_004219 at 393.871 kb on + strand, within ABIE53_004219 at 393.872 kb on - strand, within ABIE53_004219 at 393.872 kb on - strand, within ABIE53_004219 at 393.873 kb on + strand, within ABIE53_004219 at 393.874 kb on - strand, within ABIE53_004219 at 394.117 kb on + strand at 394.141 kb on + strand at 394.141 kb on + strand at 394.141 kb on + strand at 394.142 kb on - strand at 394.142 kb on - strand at 394.254 kb on - strand at 394.254 kb on - strand at 394.254 kb on - strand at 394.254 kb on - strand at 394.273 kb on + strand at 394.273 kb on + strand at 394.274 kb on - strand at 394.339 kb on - strand at 394.493 kb on - strand at 394.493 kb on - strand at 394.629 kb on - strand, within ABIE53_004220 at 394.629 kb on - strand, within ABIE53_004220 at 394.738 kb on + strand, within ABIE53_004220 at 394.738 kb on + strand, within ABIE53_004220 at 394.862 kb on - strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.930 kb on + strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220 at 394.931 kb on - strand, within ABIE53_004220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 392,461 + ABIE53_004217 0.35 -0.1 392,538 + ABIE53_004217 0.43 +2.6 392,538 + ABIE53_004217 0.43 +2.9 392,538 + ABIE53_004217 0.43 -1.2 392,539 - ABIE53_004217 0.43 -1.7 392,547 + ABIE53_004217 0.44 -0.3 392,742 + ABIE53_004217 0.64 -1.9 392,742 + ABIE53_004217 0.64 +0.5 392,742 + ABIE53_004217 0.64 -0.2 392,742 + ABIE53_004217 0.64 -1.9 392,742 + ABIE53_004217 0.64 +0.4 392,742 + ABIE53_004217 0.64 -0.0 392,743 - ABIE53_004217 0.64 +0.3 392,743 - ABIE53_004217 0.64 -1.1 392,743 - ABIE53_004217 0.64 -1.5 392,764 + ABIE53_004217 0.66 -0.0 392,764 + ABIE53_004217 0.66 -0.3 392,765 - ABIE53_004217 0.66 +0.4 392,765 - ABIE53_004217 0.66 -0.8 392,886 - ABIE53_004217 0.79 -1.7 392,892 - ABIE53_004217 0.80 +0.5 393,001 - +0.5 393,001 - +0.2 393,003 + -0.2 393,003 + -0.2 393,003 + +0.8 393,003 + -1.6 393,003 + +2.0 393,004 - -0.7 393,014 + -0.3 393,014 + -0.0 393,014 + -0.0 393,015 - -0.6 393,015 - +1.0 393,015 - +1.0 393,015 - +0.2 393,015 - -1.3 393,103 + -0.1 393,103 + +1.5 393,104 - -1.5 393,106 + -1.5 393,107 - -0.6 393,107 - -0.8 393,107 - -1.2 393,114 - -0.2 393,196 - ABIE53_004218 0.33 -0.3 393,196 - ABIE53_004218 0.33 -1.0 393,262 + ABIE53_004218 0.59 +1.0 393,262 + ABIE53_004218 0.59 -0.3 393,262 + ABIE53_004218 0.59 +1.0 393,262 + ABIE53_004218 0.59 -1.3 393,262 + ABIE53_004218 0.59 -0.8 393,263 - ABIE53_004218 0.59 -0.7 393,263 - ABIE53_004218 0.59 -1.0 393,263 - ABIE53_004218 0.59 +0.4 393,263 - ABIE53_004218 0.59 -0.1 393,263 - ABIE53_004218 0.59 +0.1 393,263 - ABIE53_004218 0.59 +0.4 393,360 + +1.0 393,426 - +0.4 393,507 + -1.8 393,507 + -0.8 393,508 - ABIE53_004219 0.10 -1.2 393,544 + ABIE53_004219 0.15 -0.2 393,545 - ABIE53_004219 0.15 +1.0 393,545 - ABIE53_004219 0.15 -1.0 393,817 + ABIE53_004219 0.53 -1.7 393,817 + ABIE53_004219 0.53 +0.4 393,818 - ABIE53_004219 0.54 +0.7 393,858 + ABIE53_004219 0.59 +0.3 393,859 - ABIE53_004219 0.59 -0.0 393,871 + ABIE53_004219 0.61 -1.6 393,871 + ABIE53_004219 0.61 -2.9 393,871 + ABIE53_004219 0.61 -2.1 393,872 - ABIE53_004219 0.61 -0.0 393,872 - ABIE53_004219 0.61 +0.3 393,873 + ABIE53_004219 0.61 -2.0 393,874 - ABIE53_004219 0.61 -1.6 394,117 + +1.0 394,141 + -0.6 394,141 + -0.2 394,141 + +0.4 394,142 - +1.2 394,142 - +0.4 394,254 - -0.1 394,254 - -1.3 394,254 - +1.0 394,254 - -0.1 394,273 + +1.0 394,273 + +0.4 394,274 - -0.7 394,339 - -0.6 394,493 - -0.9 394,493 - -1.2 394,629 - ABIE53_004220 0.14 +1.0 394,629 - ABIE53_004220 0.14 -0.8 394,738 + ABIE53_004220 0.26 +1.6 394,738 + ABIE53_004220 0.26 +1.0 394,862 - ABIE53_004220 0.39 -0.8 394,930 + ABIE53_004220 0.47 -0.2 394,930 + ABIE53_004220 0.47 -0.1 394,930 + ABIE53_004220 0.47 -1.0 394,930 + ABIE53_004220 0.47 -0.9 394,930 + ABIE53_004220 0.47 -0.5 394,930 + ABIE53_004220 0.47 -0.3 394,931 - ABIE53_004220 0.47 -1.5 394,931 - ABIE53_004220 0.47 -0.6 394,931 - ABIE53_004220 0.47 -2.4
Or see this region's nucleotide sequence