Strain Fitness in Lysobacter sp. OAE881 around ABIE51_RS09875

Experiment: D-Glucuronic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE51_RS09865 and ABIE51_RS09870 are separated by 11 nucleotidesABIE51_RS09870 and ABIE51_RS09875 overlap by 4 nucleotidesABIE51_RS09875 and ABIE51_RS09880 overlap by 4 nucleotidesABIE51_RS09880 and ABIE51_RS09885 overlap by 4 nucleotides ABIE51_RS09865: ABIE51_RS09865 - excinuclease ABC subunit UvrA, at 2,124,824 to 2,127,448 _RS09865 ABIE51_RS09870: ABIE51_RS09870 - Na+/H+ antiporter subunit G, at 2,127,460 to 2,127,837 _RS09870 ABIE51_RS09875: ABIE51_RS09875 - K+/H+ antiporter subunit F, at 2,127,834 to 2,128,112 _RS09875 ABIE51_RS09880: ABIE51_RS09880 - Na+/H+ antiporter subunit E, at 2,128,109 to 2,128,603 _RS09880 ABIE51_RS09885: ABIE51_RS09885 - monovalent cation/H+ antiporter subunit D, at 2,128,600 to 2,130,240 _RS09885 Position (kb) 2127 2128 2129Strain fitness (log2 ratio) -2 -1 0 1 2at 2127.080 kb on + strand, within ABIE51_RS09865at 2127.080 kb on + strand, within ABIE51_RS09865at 2127.080 kb on + strand, within ABIE51_RS09865at 2127.183 kb on - strand, within ABIE51_RS09865at 2127.183 kb on - strand, within ABIE51_RS09865at 2127.183 kb on - strand, within ABIE51_RS09865at 2127.656 kb on + strand, within ABIE51_RS09870at 2127.698 kb on + strand, within ABIE51_RS09870at 2127.698 kb on + strand, within ABIE51_RS09870at 2127.698 kb on + strand, within ABIE51_RS09870at 2127.698 kb on + strand, within ABIE51_RS09870at 2127.699 kb on - strand, within ABIE51_RS09870at 2127.775 kb on + strand, within ABIE51_RS09870at 2127.982 kb on + strand, within ABIE51_RS09875at 2127.982 kb on + strand, within ABIE51_RS09875at 2127.982 kb on + strand, within ABIE51_RS09875at 2127.983 kb on - strand, within ABIE51_RS09875at 2128.093 kb on + strandat 2128.093 kb on + strandat 2128.094 kb on - strandat 2128.140 kb on + strandat 2128.410 kb on + strand, within ABIE51_RS09880at 2128.520 kb on - strand, within ABIE51_RS09880at 2128.622 kb on + strandat 2128.622 kb on + strandat 2128.677 kb on - strandat 2128.697 kb on + strandat 2128.697 kb on + strandat 2128.698 kb on - strandat 2128.698 kb on - strandat 2128.719 kb on - strandat 2128.747 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C)
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2,127,080 + ABIE51_RS09865 0.86 +0.8
2,127,080 + ABIE51_RS09865 0.86 -0.1
2,127,080 + ABIE51_RS09865 0.86 +2.1
2,127,183 - ABIE51_RS09865 0.90 +0.2
2,127,183 - ABIE51_RS09865 0.90 +2.0
2,127,183 - ABIE51_RS09865 0.90 +0.8
2,127,656 + ABIE51_RS09870 0.52 +1.7
2,127,698 + ABIE51_RS09870 0.63 +0.7
2,127,698 + ABIE51_RS09870 0.63 +0.2
2,127,698 + ABIE51_RS09870 0.63 +2.7
2,127,698 + ABIE51_RS09870 0.63 -0.0
2,127,699 - ABIE51_RS09870 0.63 +0.4
2,127,775 + ABIE51_RS09870 0.83 +0.1
2,127,982 + ABIE51_RS09875 0.53 +0.2
2,127,982 + ABIE51_RS09875 0.53 -0.3
2,127,982 + ABIE51_RS09875 0.53 -1.0
2,127,983 - ABIE51_RS09875 0.53 -0.6
2,128,093 + +1.0
2,128,093 + +0.1
2,128,094 - -2.5
2,128,140 + +0.2
2,128,410 + ABIE51_RS09880 0.61 +0.3
2,128,520 - ABIE51_RS09880 0.83 -1.1
2,128,622 + -0.2
2,128,622 + +0.3
2,128,677 - -1.3
2,128,697 + -0.2
2,128,697 + -0.3
2,128,698 - +0.2
2,128,698 - -0.5
2,128,719 - +0.3
2,128,747 - +0.1

Or see this region's nucleotide sequence