Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS09865 and ABIE51_RS09870 are separated by 11 nucleotides ABIE51_RS09870 and ABIE51_RS09875 overlap by 4 nucleotides ABIE51_RS09875 and ABIE51_RS09880 overlap by 4 nucleotides ABIE51_RS09880 and ABIE51_RS09885 overlap by 4 nucleotides
ABIE51_RS09865: ABIE51_RS09865 - excinuclease ABC subunit UvrA, at 2,124,824 to 2,127,448
_RS09865
ABIE51_RS09870: ABIE51_RS09870 - Na+/H+ antiporter subunit G, at 2,127,460 to 2,127,837
_RS09870
ABIE51_RS09875: ABIE51_RS09875 - K+/H+ antiporter subunit F, at 2,127,834 to 2,128,112
_RS09875
ABIE51_RS09880: ABIE51_RS09880 - Na+/H+ antiporter subunit E, at 2,128,109 to 2,128,603
_RS09880
ABIE51_RS09885: ABIE51_RS09885 - monovalent cation/H+ antiporter subunit D, at 2,128,600 to 2,130,240
_RS09885
Position (kb)
2127
2128
2129 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2127.080 kb on + strand, within ABIE51_RS09865 at 2127.080 kb on + strand, within ABIE51_RS09865 at 2127.080 kb on + strand, within ABIE51_RS09865 at 2127.183 kb on - strand, within ABIE51_RS09865 at 2127.183 kb on - strand, within ABIE51_RS09865 at 2127.183 kb on - strand, within ABIE51_RS09865 at 2127.656 kb on + strand, within ABIE51_RS09870 at 2127.698 kb on + strand, within ABIE51_RS09870 at 2127.698 kb on + strand, within ABIE51_RS09870 at 2127.698 kb on + strand, within ABIE51_RS09870 at 2127.698 kb on + strand, within ABIE51_RS09870 at 2127.699 kb on - strand, within ABIE51_RS09870 at 2127.775 kb on + strand, within ABIE51_RS09870 at 2127.982 kb on + strand, within ABIE51_RS09875 at 2127.982 kb on + strand, within ABIE51_RS09875 at 2127.982 kb on + strand, within ABIE51_RS09875 at 2127.983 kb on - strand, within ABIE51_RS09875 at 2128.093 kb on + strand at 2128.093 kb on + strand at 2128.094 kb on - strand at 2128.140 kb on + strand at 2128.410 kb on + strand, within ABIE51_RS09880 at 2128.520 kb on - strand, within ABIE51_RS09880 at 2128.622 kb on + strand at 2128.622 kb on + strand at 2128.677 kb on - strand at 2128.697 kb on + strand at 2128.697 kb on + strand at 2128.698 kb on - strand at 2128.698 kb on - strand at 2128.719 kb on - strand at 2128.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 2,127,080 + ABIE51_RS09865 0.86 +0.8 2,127,080 + ABIE51_RS09865 0.86 -0.1 2,127,080 + ABIE51_RS09865 0.86 +2.1 2,127,183 - ABIE51_RS09865 0.90 +0.2 2,127,183 - ABIE51_RS09865 0.90 +2.0 2,127,183 - ABIE51_RS09865 0.90 +0.8 2,127,656 + ABIE51_RS09870 0.52 +1.7 2,127,698 + ABIE51_RS09870 0.63 +0.7 2,127,698 + ABIE51_RS09870 0.63 +0.2 2,127,698 + ABIE51_RS09870 0.63 +2.7 2,127,698 + ABIE51_RS09870 0.63 -0.0 2,127,699 - ABIE51_RS09870 0.63 +0.4 2,127,775 + ABIE51_RS09870 0.83 +0.1 2,127,982 + ABIE51_RS09875 0.53 +0.2 2,127,982 + ABIE51_RS09875 0.53 -0.3 2,127,982 + ABIE51_RS09875 0.53 -1.0 2,127,983 - ABIE51_RS09875 0.53 -0.6 2,128,093 + +1.0 2,128,093 + +0.1 2,128,094 - -2.5 2,128,140 + +0.2 2,128,410 + ABIE51_RS09880 0.61 +0.3 2,128,520 - ABIE51_RS09880 0.83 -1.1 2,128,622 + -0.2 2,128,622 + +0.3 2,128,677 - -1.3 2,128,697 + -0.2 2,128,697 + -0.3 2,128,698 - +0.2 2,128,698 - -0.5 2,128,719 - +0.3 2,128,747 - +0.1
Or see this region's nucleotide sequence