Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS04650 and ABIE51_RS04655 overlap by 4 nucleotides ABIE51_RS04655 and ABIE51_RS04660 are separated by 70 nucleotides ABIE51_RS04660 and ABIE51_RS04665 are separated by 74 nucleotides ABIE51_RS04665 and ABIE51_RS04670 are separated by 12 nucleotides
ABIE51_RS04650: ABIE51_RS04650 - 6,7-dimethyl-8-ribityllumazine synthase, at 1,007,489 to 1,007,956
_RS04650
ABIE51_RS04655: ABIE51_RS04655 - transcription antitermination factor NusB, at 1,007,953 to 1,008,414
_RS04655
ABIE51_RS04660: ABIE51_RS04660 - thiamine-phosphate kinase, at 1,008,485 to 1,009,453
_RS04660
ABIE51_RS04665: ABIE51_RS04665 - hypothetical protein, at 1,009,528 to 1,009,713
_RS04665
ABIE51_RS04670: ABIE51_RS04670 - FAD-linked oxidase C-terminal domain-containing protein, at 1,009,726 to 1,011,108
_RS04670
Position (kb) 1008
1009
1010 Strain fitness (log2 ratio) -1
0
1
2
3 at 1009.462 kb on + strand at 1009.958 kb on + strand, within ABIE51_RS04670 at 1009.959 kb on - strand, within ABIE51_RS04670 at 1009.959 kb on - strand, within ABIE51_RS04670 at 1009.959 kb on - strand, within ABIE51_RS04670 at 1010.430 kb on - strand, within ABIE51_RS04670
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 1,009,462 + +0.1 1,009,958 + ABIE51_RS04670 0.17 +2.3 1,009,959 - ABIE51_RS04670 0.17 -0.5 1,009,959 - ABIE51_RS04670 0.17 +0.6 1,009,959 - ABIE51_RS04670 0.17 +3.2 1,010,430 - ABIE51_RS04670 0.51 +0.1
Or see this region's nucleotide sequence