Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03795 and ABIE51_RS03800 are separated by 335 nucleotides ABIE51_RS03800 and ABIE51_RS03805 are separated by 315 nucleotides ABIE51_RS03805 and ABIE51_RS03810 are separated by 9 nucleotides ABIE51_RS03810 and ABIE51_RS03815 overlap by 11 nucleotides ABIE51_RS03815 and ABIE51_RS03820 overlap by 4 nucleotides
ABIE51_RS03795: ABIE51_RS03795 - porin, at 837,983 to 838,516
_RS03795
ABIE51_RS03800: ABIE51_RS03800 - hypothetical protein, at 838,852 to 839,127
_RS03800
ABIE51_RS03805: ABIE51_RS03805 - fumarate/nitrate reduction transcriptional regulator Fnr, at 839,443 to 840,207
_RS03805
ABIE51_RS03810: ABIE51_RS03810 - sulfite exporter TauE/SafE family protein, at 840,217 to 840,960
_RS03810
ABIE51_RS03815: ABIE51_RS03815 - cbb3-type cytochrome oxidase assembly protein CcoS, at 840,950 to 841,150
_RS03815
ABIE51_RS03820: ABIE51_RS03820 - heavy metal translocating P-type ATPase, at 841,147 to 843,552
_RS03820
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 838.722 kb on + strand at 838.722 kb on + strand at 838.723 kb on - strand at 838.753 kb on + strand at 838.753 kb on + strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.754 kb on - strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.865 kb on + strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.866 kb on - strand at 838.917 kb on - strand, within ABIE51_RS03800 at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.130 kb on + strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.131 kb on - strand at 839.199 kb on - strand at 839.317 kb on - strand at 839.415 kb on - strand at 839.415 kb on - strand at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.629 kb on + strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805 at 839.630 kb on - strand, within ABIE51_RS03805 at 840.205 kb on + strand at 840.205 kb on + strand at 840.205 kb on + strand at 840.206 kb on - strand at 840.206 kb on - strand at 840.367 kb on + strand, within ABIE51_RS03810 at 840.773 kb on + strand, within ABIE51_RS03810 at 840.773 kb on + strand, within ABIE51_RS03810 at 840.774 kb on - strand, within ABIE51_RS03810 at 840.774 kb on - strand, within ABIE51_RS03810 at 840.774 kb on - strand, within ABIE51_RS03810 at 840.774 kb on - strand, within ABIE51_RS03810 at 841.130 kb on + strand, within ABIE51_RS03815 at 841.131 kb on - strand at 841.131 kb on - strand at 841.131 kb on - strand at 841.197 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 838,722 + +0.6 838,722 + +0.2 838,723 - +0.2 838,753 + -0.3 838,753 + +0.0 838,754 - +0.2 838,754 - +0.7 838,754 - +0.2 838,865 + -0.1 838,865 + +0.2 838,865 + +0.0 838,866 - +0.6 838,866 - +1.5 838,866 - +0.4 838,866 - -0.5 838,866 - -0.0 838,866 - +0.2 838,866 - +1.0 838,917 - ABIE51_RS03800 0.24 -1.0 839,130 + -1.6 839,130 + -2.9 839,130 + +0.8 839,130 + -0.2 839,130 + -0.2 839,130 + -0.3 839,131 - +0.7 839,131 - -0.5 839,131 - +1.0 839,131 - -0.9 839,131 - -2.8 839,199 - -1.4 839,317 - +0.6 839,415 - +0.3 839,415 - -1.0 839,629 + ABIE51_RS03805 0.24 -1.1 839,629 + ABIE51_RS03805 0.24 -0.0 839,629 + ABIE51_RS03805 0.24 -0.7 839,629 + ABIE51_RS03805 0.24 +0.5 839,629 + ABIE51_RS03805 0.24 -0.7 839,630 - ABIE51_RS03805 0.24 -1.0 839,630 - ABIE51_RS03805 0.24 -1.1 840,205 + -2.2 840,205 + -1.2 840,205 + +0.1 840,206 - -2.3 840,206 - +2.5 840,367 + ABIE51_RS03810 0.20 -0.6 840,773 + ABIE51_RS03810 0.75 -1.6 840,773 + ABIE51_RS03810 0.75 +0.2 840,774 - ABIE51_RS03810 0.75 +1.3 840,774 - ABIE51_RS03810 0.75 -1.7 840,774 - ABIE51_RS03810 0.75 +0.4 840,774 - ABIE51_RS03810 0.75 +2.0 841,130 + ABIE51_RS03815 0.90 +0.7 841,131 - +1.8 841,131 - -1.8 841,131 - +0.8 841,197 + -2.7
Or see this region's nucleotide sequence