Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03390 and ABIE51_RS03395 are separated by 79 nucleotides ABIE51_RS03395 and ABIE51_RS03400 are separated by 95 nucleotides ABIE51_RS03400 and ABIE51_RS03405 are separated by 257 nucleotides
ABIE51_RS03390: ABIE51_RS03390 - quinone oxidoreductase, at 750,038 to 751,033
_RS03390
ABIE51_RS03395: ABIE51_RS03395 - zinc-dependent alcohol dehydrogenase family protein, at 751,113 to 752,117
_RS03395
ABIE51_RS03400: ABIE51_RS03400 - DsrE family protein, at 752,213 to 752,647
_RS03400
ABIE51_RS03405: ABIE51_RS03405 - SDR family NAD(P)-dependent oxidoreductase, at 752,905 to 753,822
_RS03405
Position (kb) 751
752
753 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 750.301 kb on - strand, within ABIE51_RS03390 at 750.302 kb on + strand, within ABIE51_RS03390 at 750.302 kb on + strand, within ABIE51_RS03390 at 750.302 kb on + strand, within ABIE51_RS03390 at 750.302 kb on + strand, within ABIE51_RS03390 at 750.303 kb on - strand, within ABIE51_RS03390 at 750.303 kb on - strand, within ABIE51_RS03390 at 750.313 kb on + strand, within ABIE51_RS03390 at 750.314 kb on - strand, within ABIE51_RS03390 at 750.317 kb on + strand, within ABIE51_RS03390 at 750.317 kb on + strand, within ABIE51_RS03390 at 750.317 kb on + strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.318 kb on - strand, within ABIE51_RS03390 at 750.447 kb on + strand, within ABIE51_RS03390 at 750.448 kb on - strand, within ABIE51_RS03390 at 750.448 kb on - strand, within ABIE51_RS03390 at 750.471 kb on + strand, within ABIE51_RS03390 at 750.471 kb on + strand, within ABIE51_RS03390 at 750.471 kb on + strand, within ABIE51_RS03390 at 750.471 kb on + strand, within ABIE51_RS03390 at 750.472 kb on - strand, within ABIE51_RS03390 at 750.472 kb on - strand, within ABIE51_RS03390 at 750.549 kb on + strand, within ABIE51_RS03390 at 750.640 kb on - strand, within ABIE51_RS03390 at 750.640 kb on - strand, within ABIE51_RS03390 at 750.640 kb on - strand, within ABIE51_RS03390 at 750.674 kb on + strand, within ABIE51_RS03390 at 750.674 kb on + strand, within ABIE51_RS03390 at 750.675 kb on - strand, within ABIE51_RS03390 at 750.756 kb on + strand, within ABIE51_RS03390 at 750.842 kb on - strand, within ABIE51_RS03390 at 750.852 kb on + strand, within ABIE51_RS03390 at 750.852 kb on + strand, within ABIE51_RS03390 at 750.852 kb on + strand, within ABIE51_RS03390 at 750.853 kb on - strand, within ABIE51_RS03390 at 750.868 kb on + strand, within ABIE51_RS03390 at 750.868 kb on + strand, within ABIE51_RS03390 at 750.868 kb on + strand, within ABIE51_RS03390 at 750.868 kb on + strand, within ABIE51_RS03390 at 750.869 kb on - strand, within ABIE51_RS03390 at 750.869 kb on - strand, within ABIE51_RS03390 at 750.869 kb on - strand, within ABIE51_RS03390 at 750.869 kb on - strand, within ABIE51_RS03390 at 750.869 kb on - strand, within ABIE51_RS03390 at 750.913 kb on + strand, within ABIE51_RS03390 at 750.914 kb on - strand, within ABIE51_RS03390 at 750.914 kb on - strand, within ABIE51_RS03390 at 750.927 kb on - strand, within ABIE51_RS03390 at 750.927 kb on - strand, within ABIE51_RS03390 at 751.101 kb on + strand at 751.101 kb on + strand at 751.102 kb on - strand at 751.102 kb on - strand at 751.102 kb on - strand at 751.217 kb on - strand, within ABIE51_RS03395 at 751.217 kb on - strand, within ABIE51_RS03395 at 751.217 kb on - strand, within ABIE51_RS03395 at 751.217 kb on - strand, within ABIE51_RS03395 at 751.322 kb on + strand, within ABIE51_RS03395 at 751.357 kb on + strand, within ABIE51_RS03395 at 751.358 kb on - strand, within ABIE51_RS03395 at 751.358 kb on - strand, within ABIE51_RS03395 at 751.392 kb on - strand, within ABIE51_RS03395 at 751.392 kb on - strand, within ABIE51_RS03395 at 751.392 kb on - strand, within ABIE51_RS03395 at 751.444 kb on + strand, within ABIE51_RS03395 at 751.444 kb on + strand, within ABIE51_RS03395 at 751.444 kb on + strand, within ABIE51_RS03395 at 751.445 kb on - strand, within ABIE51_RS03395 at 751.445 kb on - strand, within ABIE51_RS03395 at 751.445 kb on - strand, within ABIE51_RS03395 at 751.646 kb on - strand, within ABIE51_RS03395 at 751.677 kb on + strand, within ABIE51_RS03395 at 751.677 kb on + strand, within ABIE51_RS03395 at 751.678 kb on - strand, within ABIE51_RS03395 at 751.704 kb on - strand, within ABIE51_RS03395 at 751.710 kb on + strand, within ABIE51_RS03395 at 751.734 kb on + strand, within ABIE51_RS03395 at 751.734 kb on + strand, within ABIE51_RS03395 at 751.734 kb on + strand, within ABIE51_RS03395 at 751.735 kb on - strand, within ABIE51_RS03395 at 751.735 kb on - strand, within ABIE51_RS03395 at 751.905 kb on + strand, within ABIE51_RS03395 at 751.905 kb on + strand, within ABIE51_RS03395 at 751.920 kb on - strand, within ABIE51_RS03395 at 751.920 kb on - strand, within ABIE51_RS03395 at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.061 kb on + strand at 752.062 kb on - strand at 752.062 kb on - strand at 752.062 kb on - strand at 752.068 kb on - strand at 752.085 kb on - strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.163 kb on + strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.164 kb on - strand at 752.165 kb on + strand at 752.165 kb on + strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.166 kb on - strand at 752.172 kb on - strand at 752.172 kb on - strand at 752.278 kb on + strand, within ABIE51_RS03400 at 752.278 kb on + strand, within ABIE51_RS03400 at 752.289 kb on - strand, within ABIE51_RS03400 at 752.289 kb on - strand, within ABIE51_RS03400 at 752.300 kb on + strand, within ABIE51_RS03400 at 752.301 kb on - strand, within ABIE51_RS03400 at 752.358 kb on - strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.392 kb on + strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.393 kb on - strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.394 kb on + strand, within ABIE51_RS03400 at 752.395 kb on - strand, within ABIE51_RS03400 at 752.526 kb on - strand, within ABIE51_RS03400 at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.835 kb on + strand at 752.836 kb on - strand at 752.836 kb on - strand at 752.836 kb on - strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.889 kb on + strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.890 kb on - strand at 752.960 kb on + strand at 752.960 kb on + strand at 752.961 kb on - strand at 752.964 kb on + strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.965 kb on - strand at 752.974 kb on - strand at 753.015 kb on - strand, within ABIE51_RS03405 at 753.105 kb on - strand, within ABIE51_RS03405
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 750,301 - ABIE51_RS03390 0.26 +0.3 750,302 + ABIE51_RS03390 0.27 +0.6 750,302 + ABIE51_RS03390 0.27 -2.9 750,302 + ABIE51_RS03390 0.27 +0.8 750,302 + ABIE51_RS03390 0.27 -1.3 750,303 - ABIE51_RS03390 0.27 -0.8 750,303 - ABIE51_RS03390 0.27 +0.2 750,313 + ABIE51_RS03390 0.28 +0.1 750,314 - ABIE51_RS03390 0.28 -0.3 750,317 + ABIE51_RS03390 0.28 -1.3 750,317 + ABIE51_RS03390 0.28 -0.0 750,317 + ABIE51_RS03390 0.28 +0.3 750,318 - ABIE51_RS03390 0.28 +0.3 750,318 - ABIE51_RS03390 0.28 -1.8 750,318 - ABIE51_RS03390 0.28 +0.3 750,318 - ABIE51_RS03390 0.28 +0.3 750,318 - ABIE51_RS03390 0.28 -1.7 750,318 - ABIE51_RS03390 0.28 -0.2 750,447 + ABIE51_RS03390 0.41 +1.1 750,448 - ABIE51_RS03390 0.41 +1.3 750,448 - ABIE51_RS03390 0.41 +1.2 750,471 + ABIE51_RS03390 0.43 -0.5 750,471 + ABIE51_RS03390 0.43 +0.9 750,471 + ABIE51_RS03390 0.43 -0.0 750,471 + ABIE51_RS03390 0.43 -0.3 750,472 - ABIE51_RS03390 0.44 -0.8 750,472 - ABIE51_RS03390 0.44 -0.1 750,549 + ABIE51_RS03390 0.51 +0.3 750,640 - ABIE51_RS03390 0.60 +0.4 750,640 - ABIE51_RS03390 0.60 +0.2 750,640 - ABIE51_RS03390 0.60 +1.3 750,674 + ABIE51_RS03390 0.64 -0.7 750,674 + ABIE51_RS03390 0.64 -0.9 750,675 - ABIE51_RS03390 0.64 -1.7 750,756 + ABIE51_RS03390 0.72 -0.6 750,842 - ABIE51_RS03390 0.81 -0.2 750,852 + ABIE51_RS03390 0.82 -0.0 750,852 + ABIE51_RS03390 0.82 -2.1 750,852 + ABIE51_RS03390 0.82 -0.2 750,853 - ABIE51_RS03390 0.82 -1.8 750,868 + ABIE51_RS03390 0.83 +2.1 750,868 + ABIE51_RS03390 0.83 +0.2 750,868 + ABIE51_RS03390 0.83 +2.4 750,868 + ABIE51_RS03390 0.83 +0.3 750,869 - ABIE51_RS03390 0.83 +1.1 750,869 - ABIE51_RS03390 0.83 +0.1 750,869 - ABIE51_RS03390 0.83 -0.5 750,869 - ABIE51_RS03390 0.83 -0.8 750,869 - ABIE51_RS03390 0.83 +0.7 750,913 + ABIE51_RS03390 0.88 +1.1 750,914 - ABIE51_RS03390 0.88 +0.3 750,914 - ABIE51_RS03390 0.88 -0.0 750,927 - ABIE51_RS03390 0.89 -0.0 750,927 - ABIE51_RS03390 0.89 +0.9 751,101 + -0.9 751,101 + -0.9 751,102 - -2.8 751,102 - +0.3 751,102 - +0.9 751,217 - ABIE51_RS03395 0.10 +0.0 751,217 - ABIE51_RS03395 0.10 -0.4 751,217 - ABIE51_RS03395 0.10 -1.0 751,217 - ABIE51_RS03395 0.10 +0.2 751,322 + ABIE51_RS03395 0.21 +0.5 751,357 + ABIE51_RS03395 0.24 +0.3 751,358 - ABIE51_RS03395 0.24 -0.4 751,358 - ABIE51_RS03395 0.24 -1.2 751,392 - ABIE51_RS03395 0.28 -0.1 751,392 - ABIE51_RS03395 0.28 +0.5 751,392 - ABIE51_RS03395 0.28 +0.7 751,444 + ABIE51_RS03395 0.33 -0.1 751,444 + ABIE51_RS03395 0.33 +0.3 751,444 + ABIE51_RS03395 0.33 +0.2 751,445 - ABIE51_RS03395 0.33 +1.1 751,445 - ABIE51_RS03395 0.33 -0.8 751,445 - ABIE51_RS03395 0.33 +0.1 751,646 - ABIE51_RS03395 0.53 +0.7 751,677 + ABIE51_RS03395 0.56 +0.2 751,677 + ABIE51_RS03395 0.56 +0.1 751,678 - ABIE51_RS03395 0.56 +0.1 751,704 - ABIE51_RS03395 0.59 -2.1 751,710 + ABIE51_RS03395 0.59 -0.1 751,734 + ABIE51_RS03395 0.62 +0.4 751,734 + ABIE51_RS03395 0.62 +0.7 751,734 + ABIE51_RS03395 0.62 -1.1 751,735 - ABIE51_RS03395 0.62 -0.8 751,735 - ABIE51_RS03395 0.62 -0.9 751,905 + ABIE51_RS03395 0.79 +0.7 751,905 + ABIE51_RS03395 0.79 -1.4 751,920 - ABIE51_RS03395 0.80 -0.0 751,920 - ABIE51_RS03395 0.80 -0.6 752,061 + +0.8 752,061 + -0.4 752,061 + +0.2 752,061 + -2.9 752,061 + -0.6 752,061 + -2.7 752,062 - +0.3 752,062 - -0.2 752,062 - -0.2 752,068 - -0.5 752,085 - +1.0 752,163 + -0.8 752,163 + +0.7 752,163 + +0.4 752,163 + -0.7 752,164 - -1.9 752,164 - -1.2 752,164 - +0.5 752,164 - +0.0 752,165 + +0.0 752,165 + +0.4 752,166 - -0.7 752,166 - +0.0 752,166 - -1.6 752,166 - +0.2 752,166 - +0.5 752,172 - -0.1 752,172 - +0.6 752,278 + ABIE51_RS03400 0.15 -0.2 752,278 + ABIE51_RS03400 0.15 -0.7 752,289 - ABIE51_RS03400 0.17 +0.3 752,289 - ABIE51_RS03400 0.17 -0.5 752,300 + ABIE51_RS03400 0.20 -1.0 752,301 - ABIE51_RS03400 0.20 +0.3 752,358 - ABIE51_RS03400 0.33 +0.4 752,392 + ABIE51_RS03400 0.41 -1.1 752,392 + ABIE51_RS03400 0.41 -0.2 752,392 + ABIE51_RS03400 0.41 -0.5 752,392 + ABIE51_RS03400 0.41 -0.4 752,392 + ABIE51_RS03400 0.41 -0.6 752,393 - ABIE51_RS03400 0.41 -0.4 752,393 - ABIE51_RS03400 0.41 +1.1 752,393 - ABIE51_RS03400 0.41 -0.1 752,394 + ABIE51_RS03400 0.42 -0.5 752,394 + ABIE51_RS03400 0.42 -0.2 752,394 + ABIE51_RS03400 0.42 +0.3 752,395 - ABIE51_RS03400 0.42 +0.5 752,526 - ABIE51_RS03400 0.72 +1.0 752,835 + +0.6 752,835 + +1.4 752,835 + +0.3 752,835 + +0.0 752,835 + -0.3 752,835 + -2.0 752,836 - +0.2 752,836 - -0.4 752,836 - -1.5 752,889 + -0.1 752,889 + -0.8 752,889 + +0.1 752,889 + +0.7 752,889 + -0.6 752,889 + +0.1 752,889 + +0.7 752,890 - +0.1 752,890 - -0.1 752,890 - +1.8 752,890 - -1.0 752,890 - -0.4 752,960 + -1.5 752,960 + +0.0 752,961 - -1.0 752,964 + +0.7 752,965 - -2.0 752,965 - +0.6 752,965 - -0.5 752,965 - +0.8 752,974 - -0.2 753,015 - ABIE51_RS03405 0.12 -1.6 753,105 - ABIE51_RS03405 0.22 +0.6
Or see this region's nucleotide sequence