Experiment: D-Glucuronic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS00895 and ABIE51_RS00900 are separated by 134 nucleotides ABIE51_RS00900 and ABIE51_RS00905 are separated by 2 nucleotides ABIE51_RS00905 and ABIE51_RS00910 overlap by 4 nucleotides
ABIE51_RS00895: ABIE51_RS00895 - acetyl-CoA hydrolase/transferase family protein, at 187,297 to 188,808
_RS00895
ABIE51_RS00900: ABIE51_RS00900 - fluoride efflux transporter CrcB, at 188,943 to 189,323
_RS00900
ABIE51_RS00905: ABIE51_RS00905 - response regulator transcription factor, at 189,326 to 189,958
_RS00905
ABIE51_RS00910: ABIE51_RS00910 - histidine kinase, at 189,955 to 191,185
_RS00910
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1
2 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.483 kb on + strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.484 kb on - strand, within ABIE51_RS00895 at 188.534 kb on + strand, within ABIE51_RS00895 at 188.535 kb on - strand, within ABIE51_RS00895 at 188.841 kb on + strand at 188.841 kb on + strand at 188.841 kb on + strand at 188.841 kb on + strand at 188.875 kb on + strand at 188.875 kb on + strand at 188.875 kb on + strand at 188.875 kb on + strand at 188.875 kb on + strand at 188.876 kb on - strand at 188.876 kb on - strand at 188.876 kb on - strand at 188.876 kb on - strand at 188.908 kb on + strand at 188.909 kb on - strand at 189.079 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.229 kb on - strand, within ABIE51_RS00900 at 189.304 kb on + strand at 189.304 kb on + strand at 189.304 kb on + strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.305 kb on - strand at 189.408 kb on + strand, within ABIE51_RS00905 at 189.408 kb on + strand, within ABIE51_RS00905 at 189.408 kb on + strand, within ABIE51_RS00905 at 189.408 kb on + strand, within ABIE51_RS00905 at 189.408 kb on + strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.409 kb on - strand, within ABIE51_RS00905 at 189.540 kb on + strand, within ABIE51_RS00905 at 189.540 kb on + strand, within ABIE51_RS00905 at 189.541 kb on - strand, within ABIE51_RS00905 at 189.541 kb on - strand, within ABIE51_RS00905 at 189.569 kb on - strand, within ABIE51_RS00905 at 190.613 kb on + strand, within ABIE51_RS00910 at 190.613 kb on + strand, within ABIE51_RS00910 at 190.783 kb on + strand, within ABIE51_RS00910 at 190.784 kb on - strand, within ABIE51_RS00910 at 190.784 kb on - strand, within ABIE51_RS00910 at 190.784 kb on - strand, within ABIE51_RS00910 at 190.784 kb on - strand, within ABIE51_RS00910 at 190.925 kb on + strand, within ABIE51_RS00910 at 190.926 kb on - strand, within ABIE51_RS00910
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic Acid (C) remove 188,483 + ABIE51_RS00895 0.78 -0.1 188,483 + ABIE51_RS00895 0.78 -2.3 188,483 + ABIE51_RS00895 0.78 +0.4 188,483 + ABIE51_RS00895 0.78 -0.4 188,483 + ABIE51_RS00895 0.78 -1.4 188,483 + ABIE51_RS00895 0.78 +0.7 188,483 + ABIE51_RS00895 0.78 +0.4 188,484 - ABIE51_RS00895 0.79 -1.6 188,484 - ABIE51_RS00895 0.79 -0.0 188,484 - ABIE51_RS00895 0.79 -0.8 188,484 - ABIE51_RS00895 0.79 +0.1 188,484 - ABIE51_RS00895 0.79 -0.2 188,484 - ABIE51_RS00895 0.79 +1.1 188,484 - ABIE51_RS00895 0.79 +0.3 188,534 + ABIE51_RS00895 0.82 +0.5 188,535 - ABIE51_RS00895 0.82 +0.1 188,841 + +1.4 188,841 + -0.1 188,841 + -0.1 188,841 + -1.4 188,875 + +1.1 188,875 + -0.1 188,875 + -0.4 188,875 + +1.7 188,875 + +1.2 188,876 - +0.3 188,876 - -0.0 188,876 - +0.3 188,876 - -0.7 188,908 + +1.9 188,909 - +0.3 189,079 - ABIE51_RS00900 0.36 -2.3 189,229 - ABIE51_RS00900 0.75 -1.8 189,229 - ABIE51_RS00900 0.75 +0.3 189,229 - ABIE51_RS00900 0.75 +2.7 189,229 - ABIE51_RS00900 0.75 -0.5 189,229 - ABIE51_RS00900 0.75 +0.6 189,229 - ABIE51_RS00900 0.75 +0.5 189,229 - ABIE51_RS00900 0.75 +1.6 189,304 + -0.1 189,304 + +0.2 189,304 + +0.7 189,305 - -2.6 189,305 - -0.4 189,305 - -1.0 189,305 - +0.2 189,305 - +0.9 189,305 - +0.1 189,305 - -1.8 189,305 - +0.7 189,408 + ABIE51_RS00905 0.13 -0.3 189,408 + ABIE51_RS00905 0.13 -2.1 189,408 + ABIE51_RS00905 0.13 +1.9 189,408 + ABIE51_RS00905 0.13 -0.6 189,408 + ABIE51_RS00905 0.13 -1.0 189,409 - ABIE51_RS00905 0.13 -1.4 189,409 - ABIE51_RS00905 0.13 -2.2 189,409 - ABIE51_RS00905 0.13 -0.2 189,409 - ABIE51_RS00905 0.13 -1.5 189,409 - ABIE51_RS00905 0.13 +0.9 189,409 - ABIE51_RS00905 0.13 +0.6 189,409 - ABIE51_RS00905 0.13 -0.7 189,409 - ABIE51_RS00905 0.13 +1.1 189,540 + ABIE51_RS00905 0.34 +0.1 189,540 + ABIE51_RS00905 0.34 +0.7 189,541 - ABIE51_RS00905 0.34 -0.3 189,541 - ABIE51_RS00905 0.34 +0.1 189,569 - ABIE51_RS00905 0.38 +0.3 190,613 + ABIE51_RS00910 0.53 -1.1 190,613 + ABIE51_RS00910 0.53 -1.0 190,783 + ABIE51_RS00910 0.67 +0.5 190,784 - ABIE51_RS00910 0.67 +0.6 190,784 - ABIE51_RS00910 0.67 -0.3 190,784 - ABIE51_RS00910 0.67 +0.6 190,784 - ABIE51_RS00910 0.67 +0.2 190,925 + ABIE51_RS00910 0.79 +0.5 190,926 - ABIE51_RS00910 0.79 +0.2
Or see this region's nucleotide sequence