Strain Fitness in Sinorhizobium meliloti 1021 around SMc02431

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02430 and SMc02431 are separated by 282 nucleotidesSMc02431 and SMc02455 are separated by 105 nucleotidesSMc02455 and SMc02535 are separated by 210 nucleotidesSMc02535 and SMc02462 are separated by 204 nucleotides SMc02430: SMc02430 - transposase ISRM17, at 2,802,678 to 2,804,012 SMc02430 SMc02431: SMc02431 - hypothetical protein, at 2,804,295 to 2,805,257 SMc02431 SMc02455: SMc02455 - tRNA-Met, at 2,805,363 to 2,805,439 SMc02455 SMc02535: SMc02535 - ribosomal RNA-5S, at 2,805,650 to 2,805,769 SMc02535 SMc02462: SMc02462 - ribosomal RNA-23S, at 2,805,974 to 2,808,848 SMc02462 Position (kb) 2804 2805 2806Strain fitness (log2 ratio) -1 0 1at 2804.157 kb on + strandat 2804.242 kb on - strandat 2804.261 kb on + strandat 2804.261 kb on + strandat 2804.262 kb on - strandat 2804.262 kb on - strandat 2804.404 kb on - strand, within SMc02431at 2804.477 kb on - strand, within SMc02431at 2804.478 kb on + strand, within SMc02431at 2804.479 kb on - strand, within SMc02431at 2804.479 kb on - strand, within SMc02431at 2804.515 kb on + strand, within SMc02431at 2804.516 kb on - strand, within SMc02431at 2804.516 kb on - strand, within SMc02431at 2804.689 kb on + strand, within SMc02431at 2804.689 kb on + strand, within SMc02431at 2804.689 kb on + strand, within SMc02431at 2804.689 kb on + strand, within SMc02431at 2804.690 kb on - strand, within SMc02431at 2804.690 kb on - strand, within SMc02431at 2804.690 kb on - strand, within SMc02431at 2804.835 kb on + strand, within SMc02431at 2804.835 kb on + strand, within SMc02431at 2804.835 kb on + strand, within SMc02431at 2804.835 kb on + strand, within SMc02431at 2804.835 kb on + strand, within SMc02431at 2804.836 kb on - strand, within SMc02431at 2804.836 kb on - strand, within SMc02431at 2804.922 kb on + strand, within SMc02431at 2805.180 kb on + strandat 2805.255 kb on + strandat 2805.256 kb on - strandat 2805.346 kb on - strandat 2805.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,804,157 + -0.1
2,804,242 - -0.3
2,804,261 + -0.1
2,804,261 + -0.0
2,804,262 - -0.2
2,804,262 - -1.1
2,804,404 - SMc02431 0.11 +0.2
2,804,477 - SMc02431 0.19 -0.5
2,804,478 + SMc02431 0.19 -0.3
2,804,479 - SMc02431 0.19 +0.1
2,804,479 - SMc02431 0.19 +0.3
2,804,515 + SMc02431 0.23 -0.4
2,804,516 - SMc02431 0.23 -0.3
2,804,516 - SMc02431 0.23 -0.4
2,804,689 + SMc02431 0.41 +0.3
2,804,689 + SMc02431 0.41 -0.3
2,804,689 + SMc02431 0.41 -0.4
2,804,689 + SMc02431 0.41 +0.2
2,804,690 - SMc02431 0.41 -0.4
2,804,690 - SMc02431 0.41 -0.3
2,804,690 - SMc02431 0.41 -0.8
2,804,835 + SMc02431 0.56 -0.5
2,804,835 + SMc02431 0.56 -1.5
2,804,835 + SMc02431 0.56 -0.9
2,804,835 + SMc02431 0.56 +0.8
2,804,835 + SMc02431 0.56 +0.1
2,804,836 - SMc02431 0.56 -0.7
2,804,836 - SMc02431 0.56 -0.6
2,804,922 + SMc02431 0.65 -0.3
2,805,180 + -0.2
2,805,255 + +0.2
2,805,256 - -0.1
2,805,346 - +0.8
2,805,346 - +0.2

Or see this region's nucleotide sequence