Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02430 and SMc02431 are separated by 282 nucleotides SMc02431 and SMc02455 are separated by 105 nucleotides SMc02455 and SMc02535 are separated by 210 nucleotides SMc02535 and SMc02462 are separated by 204 nucleotides
SMc02430: SMc02430 - transposase ISRM17, at 2,802,678 to 2,804,012
SMc02430
SMc02431: SMc02431 - hypothetical protein, at 2,804,295 to 2,805,257
SMc02431
SMc02455: SMc02455 - tRNA-Met, at 2,805,363 to 2,805,439
SMc02455
SMc02535: SMc02535 - ribosomal RNA-5S, at 2,805,650 to 2,805,769
SMc02535
SMc02462: SMc02462 - ribosomal RNA-23S, at 2,805,974 to 2,808,848
SMc02462
Position (kb)
2804
2805
2806 Strain fitness (log2 ratio)
-1
0
1 at 2804.157 kb on + strand at 2804.242 kb on - strand at 2804.261 kb on + strand at 2804.261 kb on + strand at 2804.262 kb on - strand at 2804.262 kb on - strand at 2804.404 kb on - strand, within SMc02431 at 2804.477 kb on - strand, within SMc02431 at 2804.478 kb on + strand, within SMc02431 at 2804.479 kb on - strand, within SMc02431 at 2804.479 kb on - strand, within SMc02431 at 2804.515 kb on + strand, within SMc02431 at 2804.516 kb on - strand, within SMc02431 at 2804.516 kb on - strand, within SMc02431 at 2804.689 kb on + strand, within SMc02431 at 2804.689 kb on + strand, within SMc02431 at 2804.689 kb on + strand, within SMc02431 at 2804.689 kb on + strand, within SMc02431 at 2804.690 kb on - strand, within SMc02431 at 2804.690 kb on - strand, within SMc02431 at 2804.690 kb on - strand, within SMc02431 at 2804.835 kb on + strand, within SMc02431 at 2804.835 kb on + strand, within SMc02431 at 2804.835 kb on + strand, within SMc02431 at 2804.835 kb on + strand, within SMc02431 at 2804.835 kb on + strand, within SMc02431 at 2804.836 kb on - strand, within SMc02431 at 2804.836 kb on - strand, within SMc02431 at 2804.922 kb on + strand, within SMc02431 at 2805.180 kb on + strand at 2805.255 kb on + strand at 2805.256 kb on - strand at 2805.346 kb on - strand at 2805.346 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 2,804,157 + -0.1 2,804,242 - -0.3 2,804,261 + -0.1 2,804,261 + -0.0 2,804,262 - -0.2 2,804,262 - -1.1 2,804,404 - SMc02431 0.11 +0.2 2,804,477 - SMc02431 0.19 -0.5 2,804,478 + SMc02431 0.19 -0.3 2,804,479 - SMc02431 0.19 +0.1 2,804,479 - SMc02431 0.19 +0.3 2,804,515 + SMc02431 0.23 -0.4 2,804,516 - SMc02431 0.23 -0.3 2,804,516 - SMc02431 0.23 -0.4 2,804,689 + SMc02431 0.41 +0.3 2,804,689 + SMc02431 0.41 -0.3 2,804,689 + SMc02431 0.41 -0.4 2,804,689 + SMc02431 0.41 +0.2 2,804,690 - SMc02431 0.41 -0.4 2,804,690 - SMc02431 0.41 -0.3 2,804,690 - SMc02431 0.41 -0.8 2,804,835 + SMc02431 0.56 -0.5 2,804,835 + SMc02431 0.56 -1.5 2,804,835 + SMc02431 0.56 -0.9 2,804,835 + SMc02431 0.56 +0.8 2,804,835 + SMc02431 0.56 +0.1 2,804,836 - SMc02431 0.56 -0.7 2,804,836 - SMc02431 0.56 -0.6 2,804,922 + SMc02431 0.65 -0.3 2,805,180 + -0.2 2,805,255 + +0.2 2,805,256 - -0.1 2,805,346 - +0.8 2,805,346 - +0.2
Or see this region's nucleotide sequence