Strain Fitness in Sinorhizobium meliloti 1021 around SMc00003

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00069 and SMc00002 are separated by 141 nucleotidesSMc00002 and SMc00003 are separated by 205 nucleotidesSMc00003 and SMc00005 are separated by 200 nucleotides SMc00069: SMc00069 - pyridoxamine 5'-phosphate oxidase, at 983,810 to 984,430 SMc00069 SMc00002: SMc00002 - hypothetical protein, at 984,572 to 985,027 SMc00002 SMc00003: SMc00003 - chaperone protein, at 985,233 to 986,288 SMc00003 SMc00005: SMc00005 - enoyl-ACP reductase, at 986,489 to 987,307 SMc00005 Position (kb) 985 986 987Strain fitness (log2 ratio) -2 -1 0 1at 984.431 kb on - strandat 984.501 kb on + strandat 984.502 kb on - strandat 984.502 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.505 kb on - strandat 984.582 kb on + strandat 984.582 kb on + strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.583 kb on - strandat 984.999 kb on - strandat 984.999 kb on - strandat 984.999 kb on - strandat 985.038 kb on + strandat 985.045 kb on - strandat 985.045 kb on - strandat 985.045 kb on - strandat 985.119 kb on - strandat 985.123 kb on - strandat 985.257 kb on + strandat 985.258 kb on - strandat 985.398 kb on + strand, within SMc00003at 985.752 kb on - strand, within SMc00003at 985.939 kb on - strand, within SMc00003at 986.313 kb on + strandat 986.313 kb on + strandat 986.314 kb on - strandat 986.325 kb on + strandat 986.325 kb on + strandat 986.325 kb on + strandat 986.325 kb on + strandat 986.368 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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984,431 - -0.2
984,501 + -0.3
984,502 - -0.7
984,502 - +0.2
984,505 - +0.7
984,505 - -0.6
984,505 - -0.2
984,505 - -0.2
984,582 + -2.2
984,582 + +0.5
984,583 - -0.2
984,583 - +0.5
984,583 - -0.1
984,583 - +0.1
984,999 - +0.2
984,999 - -0.6
984,999 - -0.0
985,038 + +0.2
985,045 - +0.1
985,045 - +0.5
985,045 - -0.5
985,119 - -0.0
985,123 - +0.5
985,257 + +0.3
985,258 - -1.2
985,398 + SMc00003 0.16 -0.8
985,752 - SMc00003 0.49 -0.5
985,939 - SMc00003 0.67 -0.7
986,313 + -0.9
986,313 + -0.1
986,314 - -0.6
986,325 + +0.2
986,325 + -0.3
986,325 + +0.2
986,325 + -0.4
986,368 + -0.1

Or see this region's nucleotide sequence