Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21651

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21650 and SM_b21651 overlap by 18 nucleotides SM_b21650: SM_b21650 - LacI family transcriptional regulator, at 1,681,406 to 1,682,485 _b21650 SM_b21651: SM_b21651 - plasmid stability protein, at 1,682,468 to 1,682,881 _b21651 Position (kb) 1682 1683Strain fitness (log2 ratio) -1 0 1 2at 1681.475 kb on + strandat 1681.476 kb on - strandat 1681.492 kb on + strandat 1681.493 kb on - strandat 1681.493 kb on - strandat 1681.493 kb on - strandat 1681.544 kb on + strand, within SM_b21650at 1681.545 kb on - strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.655 kb on + strand, within SM_b21650at 1681.656 kb on - strand, within SM_b21650at 1681.793 kb on + strand, within SM_b21650at 1681.851 kb on - strand, within SM_b21650at 1681.851 kb on - strand, within SM_b21650at 1681.979 kb on + strand, within SM_b21650at 1681.980 kb on - strand, within SM_b21650at 1682.021 kb on + strand, within SM_b21650at 1682.022 kb on - strand, within SM_b21650at 1682.022 kb on - strand, within SM_b21650at 1682.024 kb on - strand, within SM_b21650at 1682.052 kb on - strand, within SM_b21650at 1682.100 kb on - strand, within SM_b21650at 1682.100 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.168 kb on - strand, within SM_b21650at 1682.224 kb on + strand, within SM_b21650at 1682.559 kb on - strand, within SM_b21651at 1682.632 kb on - strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.661 kb on + strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.662 kb on - strand, within SM_b21651at 1682.663 kb on + strand, within SM_b21651at 1682.663 kb on + strand, within SM_b21651at 1682.752 kb on - strand, within SM_b21651at 1682.871 kb on - strandat 1683.011 kb on + strandat 1683.012 kb on - strandat 1683.012 kb on - strandat 1683.013 kb on + strandat 1683.014 kb on - strandat 1683.150 kb on + strandat 1683.152 kb on + strandat 1683.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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1,681,475 + +1.7
1,681,476 - +1.4
1,681,492 + +1.2
1,681,493 - +0.5
1,681,493 - +1.3
1,681,493 - +1.1
1,681,544 + SM_b21650 0.13 +1.4
1,681,545 - SM_b21650 0.13 -0.0
1,681,655 + SM_b21650 0.23 +0.3
1,681,655 + SM_b21650 0.23 -0.5
1,681,655 + SM_b21650 0.23 +0.6
1,681,656 - SM_b21650 0.23 +0.8
1,681,793 + SM_b21650 0.36 +1.2
1,681,851 - SM_b21650 0.41 +0.5
1,681,851 - SM_b21650 0.41 +0.5
1,681,979 + SM_b21650 0.53 +0.8
1,681,980 - SM_b21650 0.53 +0.6
1,682,021 + SM_b21650 0.57 +0.7
1,682,022 - SM_b21650 0.57 +1.3
1,682,022 - SM_b21650 0.57 +1.9
1,682,024 - SM_b21650 0.57 -0.3
1,682,052 - SM_b21650 0.60 +0.5
1,682,100 - SM_b21650 0.64 +1.4
1,682,100 - SM_b21650 0.64 +0.6
1,682,168 - SM_b21650 0.71 -0.5
1,682,168 - SM_b21650 0.71 +0.3
1,682,168 - SM_b21650 0.71 -0.3
1,682,224 + SM_b21650 0.76 +1.2
1,682,559 - SM_b21651 0.22 -1.0
1,682,632 - SM_b21651 0.40 -0.3
1,682,661 + SM_b21651 0.47 +0.5
1,682,661 + SM_b21651 0.47 +0.4
1,682,661 + SM_b21651 0.47 +0.2
1,682,662 - SM_b21651 0.47 -0.1
1,682,662 - SM_b21651 0.47 +0.1
1,682,662 - SM_b21651 0.47 +1.1
1,682,663 + SM_b21651 0.47 -0.1
1,682,663 + SM_b21651 0.47 -0.1
1,682,752 - SM_b21651 0.69 +1.3
1,682,871 - +0.5
1,683,011 + -1.1
1,683,012 - -0.3
1,683,012 - -1.6
1,683,013 + -0.0
1,683,014 - -0.7
1,683,150 + -0.6
1,683,152 + -0.1
1,683,172 - -0.7

Or see this region's nucleotide sequence