Experiment: D-Cellobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21579 and SM_b21580 are separated by 46 nucleotides SM_b21580 and SM_b21581 are separated by 264 nucleotides SM_b21581 and SM_b21582 are separated by 95 nucleotides SM_b21582 and SM_b21583 are separated by 17 nucleotides
SM_b21579: SM_b21579 - MerR family transcriptional regulator, at 1,119,502 to 1,119,945
_b21579
SM_b21580: SM_b21580 - hypothetical protein, at 1,119,992 to 1,120,438
_b21580
SM_b21581: SM_b21581 - glycosyltransferase, at 1,120,703 to 1,121,794
_b21581
SM_b21582: SM_b21582 - exoD-like membrane protein, at 1,121,890 to 1,122,522
_b21582
SM_b21583: SM_b21583 - hypothetical protein, at 1,122,540 to 1,122,902
_b21583
Position (kb) 1120
1121
1122 Strain fitness (log2 ratio) -1
0
1 at 1119.785 kb on + strand, within SM_b21579 at 1119.944 kb on - strand at 1119.944 kb on - strand at 1119.984 kb on + strand at 1119.985 kb on - strand at 1119.985 kb on - strand at 1120.045 kb on - strand at 1120.120 kb on + strand, within SM_b21580 at 1120.291 kb on + strand, within SM_b21580 at 1120.292 kb on - strand, within SM_b21580 at 1120.421 kb on + strand at 1120.422 kb on - strand at 1120.422 kb on - strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.425 kb on + strand at 1120.426 kb on - strand at 1120.426 kb on - strand at 1120.467 kb on + strand at 1120.754 kb on + strand at 1120.755 kb on - strand at 1120.787 kb on - strand at 1120.800 kb on + strand at 1120.847 kb on - strand, within SM_b21581 at 1120.847 kb on - strand at 1120.980 kb on + strand, within SM_b21581 at 1120.981 kb on - strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.047 kb on + strand, within SM_b21581 at 1121.082 kb on - strand, within SM_b21581 at 1121.082 kb on - strand, within SM_b21581 at 1121.222 kb on + strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.223 kb on - strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.393 kb on + strand, within SM_b21581 at 1121.394 kb on - strand, within SM_b21581 at 1121.394 kb on - strand, within SM_b21581 at 1121.407 kb on - strand, within SM_b21581 at 1121.537 kb on + strand, within SM_b21581 at 1121.711 kb on + strand at 1121.802 kb on - strand at 1121.816 kb on - strand at 1121.962 kb on - strand, within SM_b21582 at 1121.962 kb on - strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.177 kb on + strand, within SM_b21582 at 1122.178 kb on - strand, within SM_b21582 at 1122.389 kb on + strand, within SM_b21582 at 1122.402 kb on + strand, within SM_b21582 at 1122.534 kb on + strand at 1122.535 kb on - strand at 1122.535 kb on - strand at 1122.604 kb on + strand, within SM_b21583 at 1122.641 kb on - strand, within SM_b21583 at 1122.684 kb on - strand, within SM_b21583 at 1122.711 kb on - strand, within SM_b21583 at 1122.727 kb on - strand, within SM_b21583 at 1122.767 kb on + strand, within SM_b21583
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cellobiose (C) remove 1,119,785 + SM_b21579 0.64 -0.4 1,119,944 - -0.6 1,119,944 - -0.0 1,119,984 + -0.0 1,119,985 - +0.1 1,119,985 - +0.1 1,120,045 - +0.1 1,120,120 + SM_b21580 0.29 -1.4 1,120,291 + SM_b21580 0.67 -1.4 1,120,292 - SM_b21580 0.67 +0.6 1,120,421 + +0.9 1,120,422 - -0.1 1,120,422 - -0.1 1,120,425 + -0.8 1,120,425 + +0.2 1,120,425 + +0.2 1,120,425 + -0.2 1,120,426 - +0.4 1,120,426 - +0.0 1,120,467 + -0.5 1,120,754 + +0.1 1,120,755 - -0.6 1,120,787 - -1.0 1,120,800 + -0.0 1,120,847 - SM_b21581 0.13 +0.7 1,120,847 - +0.6 1,120,980 + SM_b21581 0.25 +1.1 1,120,981 - SM_b21581 0.25 -0.3 1,121,047 + SM_b21581 0.32 +0.4 1,121,047 + SM_b21581 0.32 +0.6 1,121,047 + SM_b21581 0.32 +0.2 1,121,082 - SM_b21581 0.35 -0.3 1,121,082 - SM_b21581 0.35 +0.8 1,121,222 + SM_b21581 0.48 +0.6 1,121,223 - SM_b21581 0.48 +0.1 1,121,223 - SM_b21581 0.48 +0.3 1,121,223 - SM_b21581 0.48 +0.1 1,121,223 - SM_b21581 0.48 -0.1 1,121,223 - SM_b21581 0.48 +0.3 1,121,393 + SM_b21581 0.63 -0.4 1,121,393 + SM_b21581 0.63 +0.7 1,121,393 + SM_b21581 0.63 -0.1 1,121,394 - SM_b21581 0.63 +0.7 1,121,394 - SM_b21581 0.63 -0.3 1,121,407 - SM_b21581 0.64 +0.5 1,121,537 + SM_b21581 0.76 -0.4 1,121,711 + -0.2 1,121,802 - -0.1 1,121,816 - -0.5 1,121,962 - SM_b21582 0.11 +0.8 1,121,962 - SM_b21582 0.11 -0.5 1,122,177 + SM_b21582 0.45 -0.0 1,122,177 + SM_b21582 0.45 +0.4 1,122,178 - SM_b21582 0.45 +1.1 1,122,389 + SM_b21582 0.79 +1.3 1,122,402 + SM_b21582 0.81 -0.5 1,122,534 + -0.9 1,122,535 - -0.5 1,122,535 - -0.0 1,122,604 + SM_b21583 0.18 -0.1 1,122,641 - SM_b21583 0.28 -1.3 1,122,684 - SM_b21583 0.40 +0.5 1,122,711 - SM_b21583 0.47 +0.1 1,122,727 - SM_b21583 0.52 -0.7 1,122,767 + SM_b21583 0.63 -0.1
Or see this region's nucleotide sequence