Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS37005

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
3,757,424	+		RR42_RS37000	0.80	+0.2
3,757,556	+		RR42_RS37000	0.85	-0.3
3,757,556	+		RR42_RS37000	0.85	-0.3
3,757,557	-		RR42_RS37000	0.85	+1.0
3,757,557	-		RR42_RS37000	0.85	+0.2
3,757,557	-		RR42_RS37000	0.85	+0.2
3,757,702	+				-0.6
3,757,702	+				-0.3
3,757,703	-				+0.8
3,757,706	+				-0.6
3,757,706	+				-1.2
3,757,706	+				+1.6
3,757,707	-				-0.4
3,757,707	-				+0.8
3,757,707	-				+0.3
3,757,718	+				-0.5
3,757,734	-				-1.3
3,757,734	-				+0.2
3,757,737	+				-0.9
3,757,737	+				-0.6
3,757,738	-				-0.9
3,758,177	+				-0.5
3,758,177	+				+0.0
3,758,178	-				+0.7
3,758,178	-				-1.1
3,758,179	+				-0.6
3,758,201	-				+0.1
3,758,248	+				-1.1
3,758,249	-				+1.6
3,758,302	+				-0.2
3,758,303	-				-0.1
3,758,609	+		RR42_RS37005	0.43	-0.7
3,758,609	+		RR42_RS37005	0.43	-0.6
3,758,610	-		RR42_RS37005	0.44	-1.3
3,759,095	+				+2.1
3,759,339	+		RR42_RS37010	0.21	+0.6
3,759,339	+		RR42_RS37010	0.21	-0.5
3,759,339	+		RR42_RS37010	0.21	-0.7
3,759,339	+		RR42_RS37010	0.21	+0.3
3,759,339	+		RR42_RS37010	0.21	-0.8
3,759,339	+		RR42_RS37010	0.21	+0.4
3,759,339	+		RR42_RS37010	0.21	-0.7
3,759,340	-		RR42_RS37010	0.21	+1.9
3,759,340	-		RR42_RS37010	0.21	+0.4
3,759,344	+		RR42_RS37010	0.22	-0.3
3,759,344	+		RR42_RS37010	0.22	-0.1
3,759,344	+		RR42_RS37010	0.22	-0.5
3,759,345	-		RR42_RS37010	0.22	-1.3
3,759,345	-		RR42_RS37010	0.22	+1.4
3,759,425	+		RR42_RS37010	0.30	-0.5
3,759,504	-		RR42_RS37010	0.37	-0.8
3,759,504	-		RR42_RS37010	0.37	+0.0
3,759,506	+		RR42_RS37010	0.37	-0.3
3,759,506	+		RR42_RS37010	0.37	-0.4
3,759,507	-		RR42_RS37010	0.37	+0.5
3,759,552	-		RR42_RS37010	0.42	+1.4
3,759,666	+		RR42_RS37010	0.52	+0.1
3,759,666	+		RR42_RS37010	0.52	-0.6
3,759,667	+		RR42_RS37010	0.52	+1.0
3,759,667	-		RR42_RS37010	0.52	-0.2
3,759,929	+		RR42_RS37010	0.77	-0.2
3,759,930	-		RR42_RS37010	0.77	-0.2
3,760,046	+		RR42_RS37010	0.88	-0.5
3,760,047	-		RR42_RS37010	0.88	+0.3