Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35840

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
3,487,066	+		RR42_RS35835	0.64	-0.5
3,487,067	-		RR42_RS35835	0.64	+0.2
3,487,171	+		RR42_RS35835	0.70	+0.1
3,487,171	+		RR42_RS35835	0.70	-1.1
3,487,171	+		RR42_RS35835	0.70	+0.9
3,487,264	+		RR42_RS35835	0.75	+0.1
3,487,323	+		RR42_RS35835	0.78	-0.2
3,487,323	+		RR42_RS35835	0.78	+0.1
3,487,323	+		RR42_RS35835	0.78	+0.1
3,487,323	+		RR42_RS35835	0.78	-0.8
3,487,323	+		RR42_RS35835	0.78	-0.9
3,487,323	+		RR42_RS35835	0.78	+0.1
3,487,323	+		RR42_RS35835	0.78	+1.3
3,487,323	+		RR42_RS35835	0.78	-0.2
3,487,323	+		RR42_RS35835	0.78	-0.7
3,487,324	-		RR42_RS35835	0.78	+0.3
3,487,324	-		RR42_RS35835	0.78	-0.5
3,487,324	-		RR42_RS35835	0.78	+0.4
3,487,324	-		RR42_RS35835	0.78	+0.4
3,487,324	-		RR42_RS35835	0.78	+0.0
3,487,324	-		RR42_RS35835	0.78	+0.8
3,487,324	-		RR42_RS35835	0.78	-0.2
3,487,324	-		RR42_RS35835	0.78	-0.3
3,487,421	+		RR42_RS35835	0.84	+0.3
3,487,422	-		RR42_RS35835	0.84	-0.3
3,487,422	-		RR42_RS35835	0.84	-0.8
3,487,527	+		RR42_RS35835	0.89	-0.5
3,487,585	-				+1.5
3,487,727	+				-0.2
3,487,727	+				+0.7
3,487,727	+				+0.5
3,487,728	-				-0.5
3,487,809	+				+0.9
3,487,810	-				-0.1
3,487,821	+				+0.8
3,487,822	-				-0.5
3,488,365	+		RR42_RS35840	0.30	-0.3
3,488,671	-		RR42_RS35840	0.49	+1.3
3,488,684	+		RR42_RS35840	0.49	-0.9
3,488,927	-		RR42_RS35840	0.64	+1.4
3,488,927	-		RR42_RS35840	0.64	+0.3
3,489,126	+		RR42_RS35840	0.76	-0.1
3,489,183	+		RR42_RS35840	0.80	+3.1
3,489,237	+		RR42_RS35840	0.83	+2.7
3,489,238	-		RR42_RS35840	0.83	+1.0
3,489,238	-		RR42_RS35840	0.83	-0.1
3,489,404	-				-0.3
3,489,404	-				-0.6
3,489,424	+				-0.4
3,489,424	+				-0.0
3,489,424	+				+1.1
3,489,425	-				-0.1
3,489,459	+				-0.4
3,489,459	+				+0.4
3,489,460	-				+0.4
3,489,481	-				-0.0
3,489,494	-				+0.4
3,489,505	+				+0.5
3,489,506	-				-0.2
3,489,506	-				-0.8
3,489,546	+				+0.0
3,489,606	-				-1.6
3,489,606	-				-1.6
3,489,669	+		RR42_RS35845	0.23	+0.7
3,489,669	+		RR42_RS35845	0.23	-0.7
3,489,798	+		RR42_RS35845	0.50	-0.5
3,489,798	+		RR42_RS35845	0.50	-1.3
3,489,798	+		RR42_RS35845	0.50	+0.3
3,489,799	-		RR42_RS35845	0.50	-0.2
3,489,807	+		RR42_RS35845	0.52	+0.4
3,489,807	+		RR42_RS35845	0.52	+0.4
3,489,807	+		RR42_RS35845	0.52	-0.5
3,489,807	+		RR42_RS35845	0.52	-0.4
3,489,807	+		RR42_RS35845	0.52	-0.5
3,489,807	+		RR42_RS35845	0.52	+0.1
3,489,807	+		RR42_RS35845	0.52	-1.0
3,489,807	+		RR42_RS35845	0.52	-0.5
3,489,808	-		RR42_RS35845	0.52	-0.1
3,489,808	-		RR42_RS35845	0.52	-2.3
3,489,808	-		RR42_RS35845	0.52	-1.7
3,489,808	-		RR42_RS35845	0.52	-0.3
3,489,808	-		RR42_RS35845	0.52	-0.2
3,489,808	-		RR42_RS35845	0.52	-1.5
3,489,808	-		RR42_RS35845	0.52	+0.2
3,489,891	+		RR42_RS35845	0.69	+0.1
3,489,891	+		RR42_RS35845	0.69	-2.3
3,489,892	-		RR42_RS35845	0.70	+0.6
3,489,892	-		RR42_RS35845	0.70	+0.3
3,489,927	+		RR42_RS35845	0.77	+2.3
3,489,967	-		RR42_RS35845	0.85	-0.8
3,489,967	-		RR42_RS35845	0.85	-2.2
3,490,145	+				-0.2
3,490,152	+				+0.2
3,490,159	+				-1.7
3,490,195	-				+0.1
3,490,207	-				-0.1
3,490,207	-				+0.4
3,490,227	-				+1.2
3,490,365	+		RR42_RS35850	0.42	-0.8
3,490,365	+		RR42_RS35850	0.42	-1.0
3,490,366	-		RR42_RS35850	0.42	-0.9