Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33420

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,915,082	+		RR42_RS33415	0.14	-0.1
2,915,262	+		RR42_RS33415	0.30	-1.3
2,915,262	+		RR42_RS33415	0.30	-0.7
2,915,262	+		RR42_RS33415	0.30	-0.3
2,915,262	+		RR42_RS33415	0.30	-0.2
2,915,262	+		RR42_RS33415	0.30	-0.6
2,915,263	-		RR42_RS33415	0.30	+1.0
2,915,412	+		RR42_RS33415	0.42	+0.1
2,915,499	+		RR42_RS33415	0.50	+0.8
2,915,753	-		RR42_RS33415	0.72	+0.4
2,915,753	-		RR42_RS33415	0.72	-0.1
2,915,753	-		RR42_RS33415	0.72	+0.2
2,916,058	+				-0.1
2,916,058	+				+2.0
2,916,059	-				+1.0
2,916,062	+				-0.4
2,916,063	-				+0.0
2,916,083	+				-1.4
2,916,083	+				-0.3
2,916,083	+				+1.4
2,916,084	-				-1.1
2,916,096	+				+1.0
2,916,096	+				-0.4
2,916,251	+		RR42_RS33420	0.13	+0.0
2,916,251	+		RR42_RS33420	0.13	+0.2
2,916,281	+		RR42_RS33420	0.16	-1.8
2,916,346	+		RR42_RS33420	0.21	+0.4
2,916,346	+		RR42_RS33420	0.21	+0.5
2,916,590	+		RR42_RS33420	0.40	-0.4
2,916,591	-		RR42_RS33420	0.40	-1.1
2,916,726	-		RR42_RS33420	0.51	-0.5
2,916,726	-		RR42_RS33420	0.51	-0.8
2,916,726	-		RR42_RS33420	0.51	-0.1
2,916,851	+		RR42_RS33420	0.60	-1.2
2,916,955	+		RR42_RS33420	0.69	-0.6
2,916,955	+		RR42_RS33420	0.69	-1.3
2,916,956	-		RR42_RS33420	0.69	-0.2
2,916,968	+		RR42_RS33420	0.70	-0.5
2,916,969	-		RR42_RS33420	0.70	-2.4
2,917,080	-		RR42_RS33420	0.78	-1.0
2,917,157	+		RR42_RS33420	0.85	-0.1
2,917,158	-		RR42_RS33420	0.85	-0.9
2,917,158	-		RR42_RS33420	0.85	-0.9
2,917,158	-		RR42_RS33420	0.85	-1.6
2,917,497	+				+0.3
2,917,498	-				+0.0
2,917,943	+		RR42_RS33425	0.82	-0.7
2,917,945	+		RR42_RS33425	0.83	-0.8
2,917,945	+		RR42_RS33425	0.83	-0.2
2,917,945	+		RR42_RS33425	0.83	+1.0
2,917,946	-		RR42_RS33425	0.83	-0.9
2,918,037	-				-0.9
2,918,101	+				+0.2
2,918,101	+				-0.5
2,918,153	-				-2.3
2,918,153	-				-1.0
2,918,153	-				-1.1
2,918,159	+				+0.2
2,918,159	+				-0.7
2,918,160	-				-0.6
2,918,160	-				-1.0
2,918,160	-				+0.1
2,918,324	+				-0.2
2,918,325	-				-0.7