Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32975

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,796,951	-		RR42_RS32970	0.55	-0.4
2,796,951	-		RR42_RS32970	0.55	+3.0
2,797,202	+		RR42_RS32970	0.71	-0.5
2,797,202	+		RR42_RS32970	0.71	-0.8
2,797,203	-		RR42_RS32970	0.71	-1.6
2,797,203	-		RR42_RS32970	0.71	-1.8
2,797,203	-		RR42_RS32970	0.71	-0.7
2,797,203	-		RR42_RS32970	0.71	-0.3
2,797,206	-		RR42_RS32970	0.71	-0.5
2,797,296	+		RR42_RS32970	0.76	-0.3
2,797,296	+		RR42_RS32970	0.76	-1.3
2,797,389	+		RR42_RS32970	0.82	+0.9
2,797,390	-		RR42_RS32970	0.82	+0.3
2,797,390	-		RR42_RS32970	0.82	-1.1
2,797,390	-		RR42_RS32970	0.82	+0.3
2,797,512	-		RR42_RS32970	0.90	+1.0
2,797,512	-		RR42_RS32970	0.90	-1.3
2,797,766	+				+0.1
2,797,766	+				+0.2
2,797,766	+				-0.5
2,797,767	-				-0.6
2,797,767	-				-0.3
2,797,784	-				-0.5
2,797,816	+				+1.5
2,798,334	+		RR42_RS32975	0.56	-0.9
2,798,335	-		RR42_RS32975	0.56	-1.0
2,798,640	-				+0.1
2,798,640	-				-1.3
2,798,769	+				-0.8
2,798,770	-				+0.7
2,798,770	-				+0.6
2,798,771	+				-1.3
2,798,772	-				-1.1
2,798,774	-				-1.2
2,798,892	+				-0.1
2,798,893	-				+0.1
2,798,953	-				+0.2
2,799,006	+				-0.1
2,799,006	+				+0.4
2,799,006	+				+0.7
2,799,007	-				+1.4
2,799,007	-				+0.2
2,799,007	-				+0.1
2,799,064	+		RR42_RS32980	0.11	+0.6
2,799,135	+		RR42_RS32980	0.14	-0.1
2,799,136	-		RR42_RS32980	0.14	-0.6
2,799,136	-		RR42_RS32980	0.14	-0.6
2,799,270	-		RR42_RS32980	0.19	-0.6
2,799,270	-		RR42_RS32980	0.19	-0.6
2,799,276	+		RR42_RS32980	0.19	-1.0
2,799,276	+		RR42_RS32980	0.19	-0.5
2,799,276	+		RR42_RS32980	0.19	-0.6
2,799,277	-		RR42_RS32980	0.19	+0.3
2,799,277	-		RR42_RS32980	0.19	-0.4
2,799,354	+		RR42_RS32980	0.22	-0.1
2,799,354	+		RR42_RS32980	0.22	-0.3
2,799,355	-		RR42_RS32980	0.22	+0.3
2,799,357	+		RR42_RS32980	0.22	+0.2
2,799,357	+		RR42_RS32980	0.22	+0.0
2,799,357	+		RR42_RS32980	0.22	+0.5
2,799,358	-		RR42_RS32980	0.22	-0.3
2,799,524	-		RR42_RS32980	0.28	+1.6
2,799,618	+		RR42_RS32980	0.32	+0.7
2,799,618	+		RR42_RS32980	0.32	-0.0
2,799,618	+		RR42_RS32980	0.32	-1.6
2,799,619	-		RR42_RS32980	0.32	-1.5
2,799,621	+		RR42_RS32980	0.32	+1.0
2,799,621	+		RR42_RS32980	0.32	-1.0
2,799,621	+		RR42_RS32980	0.32	+0.1
2,799,622	-		RR42_RS32980	0.32	-0.5
2,799,622	-		RR42_RS32980	0.32	-0.4
2,799,622	-		RR42_RS32980	0.32	+0.4
2,799,625	+		RR42_RS32980	0.32	-0.5
2,799,625	+		RR42_RS32980	0.32	-1.0
2,799,625	+		RR42_RS32980	0.32	+0.1
2,799,626	-		RR42_RS32980	0.32	+2.0
2,799,626	-		RR42_RS32980	0.32	+1.7
2,799,626	-		RR42_RS32980	0.32	+0.0
2,799,626	-		RR42_RS32980	0.32	+0.2
2,799,627	+		RR42_RS32980	0.32	+0.3
2,799,627	+		RR42_RS32980	0.32	+2.7
2,799,627	+		RR42_RS32980	0.32	-0.4
2,799,627	+		RR42_RS32980	0.32	+0.4
2,799,628	-		RR42_RS32980	0.32	+0.4
2,799,628	-		RR42_RS32980	0.32	+0.3
2,799,644	-		RR42_RS32980	0.33	+0.5
2,799,660	+		RR42_RS32980	0.33	-0.3