Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32740
Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Sisomicin 0.035 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,739,631 | - | RR42_RS32735 | 0.57 | -0.3 | |
2,740,523 | + | -0.4 | |||
2,740,524 | - | -0.4 | |||
2,741,106 | - | RR42_RS32740 | 0.68 | -3.4 | |
2,741,413 | - | -0.7 | |||
2,741,712 | + | RR42_RS32745 | 0.20 | -0.2 | |
2,741,712 | + | RR42_RS32745 | 0.20 | -1.0 | |
2,741,712 | + | RR42_RS32745 | 0.20 | +2.0 | |
2,741,712 | + | RR42_RS32745 | 0.20 | +0.3 | |
2,741,713 | - | RR42_RS32745 | 0.20 | +0.4 | |
2,741,713 | - | RR42_RS32745 | 0.20 | +0.7 | |
2,741,730 | + | RR42_RS32745 | 0.22 | +0.2 | |
2,741,925 | + | RR42_RS32745 | 0.39 | +0.8 | |
2,741,930 | - | RR42_RS32745 | 0.39 | -0.9 | |
2,741,930 | - | RR42_RS32745 | 0.39 | -0.2 | |
2,742,124 | + | RR42_RS32745 | 0.56 | -1.3 | |
2,742,125 | - | RR42_RS32745 | 0.56 | -1.5 | |
2,742,195 | + | RR42_RS32745 | 0.62 | -0.5 | |
2,742,196 | - | RR42_RS32745 | 0.62 | -1.0 | |
2,742,356 | - | RR42_RS32745 | 0.76 | -1.8 |
Or see this region's nucleotide sequence