Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32610

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,711,740	+		RR42_RS32605	0.32	+0.2
2,711,740	+		RR42_RS32605	0.32	-0.6
2,711,740	+		RR42_RS32605	0.32	+0.1
2,711,866	+		RR42_RS32605	0.45	-0.5
2,711,867	-		RR42_RS32605	0.45	+0.3
2,711,867	-		RR42_RS32605	0.45	+0.7
2,711,867	-		RR42_RS32605	0.45	+0.3
2,711,926	+		RR42_RS32605	0.51	-0.1
2,712,001	+		RR42_RS32605	0.59	+0.7
2,712,002	-		RR42_RS32605	0.59	-0.2
2,712,046	+		RR42_RS32605	0.64	-1.8
2,712,047	-		RR42_RS32605	0.64	-0.4
2,712,047	-		RR42_RS32605	0.64	+0.5
2,712,047	-		RR42_RS32605	0.64	+0.4
2,712,076	+		RR42_RS32605	0.67	+0.0
2,712,076	+		RR42_RS32605	0.67	+0.5
2,712,076	+		RR42_RS32605	0.67	-0.2
2,712,077	-		RR42_RS32605	0.67	+0.7
2,712,077	-		RR42_RS32605	0.67	-1.6
2,712,077	-		RR42_RS32605	0.67	+1.5
2,712,077	-		RR42_RS32605	0.67	-1.0
2,712,077	-		RR42_RS32605	0.67	+0.5
2,712,404	+				+0.8
2,712,405	-				+1.6
2,712,468	+				+0.5
2,712,468	+				+0.5
2,712,469	-				+0.4
2,712,489	+				-0.2
2,712,490	-				-0.2
2,712,490	-				-0.2
2,712,490	-				+2.1
2,712,490	-				-1.4
2,712,490	-				-1.2
2,712,493	+				+0.1
2,712,494	-				-0.4
2,712,594	+				-3.0
2,712,595	-				+1.0
2,712,668	+		RR42_RS32610	0.12	-0.4
2,712,669	-		RR42_RS32610	0.12	+1.4
2,712,672	+		RR42_RS32610	0.12	+0.5
2,712,673	-		RR42_RS32610	0.12	+0.1
2,712,673	-		RR42_RS32610	0.12	-0.2
2,712,673	-		RR42_RS32610	0.12	-0.2
2,712,673	-		RR42_RS32610	0.12	-0.6
2,712,673	-		RR42_RS32610	0.12	+0.0
2,712,673	-		RR42_RS32610	0.12	+0.2
2,712,780	+		RR42_RS32610	0.20	+0.2
2,712,780	+		RR42_RS32610	0.20	-2.1
2,712,780	+		RR42_RS32610	0.20	+1.0
2,712,837	+		RR42_RS32610	0.25	+0.3
2,712,849	+		RR42_RS32610	0.26	-0.1
2,712,849	+		RR42_RS32610	0.26	+1.6
2,712,850	-		RR42_RS32610	0.26	+2.0
2,712,850	-		RR42_RS32610	0.26	-0.9
2,712,850	-		RR42_RS32610	0.26	-0.8
2,712,850	-		RR42_RS32610	0.26	-0.7
2,713,029	-		RR42_RS32610	0.40	+0.2
2,713,029	-		RR42_RS32610	0.40	+0.5
2,713,074	+		RR42_RS32610	0.44	+0.0
2,713,074	+		RR42_RS32610	0.44	-0.7
2,713,075	-		RR42_RS32610	0.44	-0.4
2,713,131	+		RR42_RS32610	0.48	-0.3
2,713,132	-		RR42_RS32610	0.48	-0.7
2,713,242	+		RR42_RS32610	0.57	-0.4
2,713,284	+		RR42_RS32610	0.60	+0.5
2,713,285	-		RR42_RS32610	0.60	-1.4
2,713,285	-		RR42_RS32610	0.60	-0.6
2,713,895	+				+1.9
2,713,895	+				-1.2
2,713,895	+				+0.7
2,713,899	+				-0.8
2,713,899	+				-3.0
2,713,951	+				-1.5
2,714,049	-				-0.9
2,714,049	-				-0.2
2,714,051	+				+0.1
2,714,063	+				-1.8
2,714,063	+				+0.5
2,714,069	+				+0.1
2,714,069	+				-0.2
2,714,069	+				+0.5
2,714,069	+				-0.6
2,714,069	+				+0.1
2,714,069	+				-0.9
2,714,069	+				-0.1
2,714,070	-				+0.0
2,714,070	-				+0.6
2,714,070	-				-0.5
2,714,070	-				+1.0
2,714,070	-				-0.8
2,714,070	-				-0.5
2,714,129	+				-0.2
2,714,130	-				+0.0
2,714,144	+				+0.8
2,714,144	+				+1.3
2,714,144	+				+0.4
2,714,145	-				+0.9
2,714,178	-				+0.0
2,714,178	-				-0.5
2,714,178	-				+1.2
2,714,190	-				-0.4
2,714,190	-				-1.3
2,714,257	+				+0.0
2,714,257	+				-1.6
2,714,257	+				-0.7
2,714,258	-				-0.1
2,714,258	-				-1.0
2,714,380	+		RR42_RS32615	0.15	-0.1
2,714,431	+		RR42_RS32615	0.21	+0.5
2,714,432	-		RR42_RS32615	0.21	-0.2
2,714,432	-		RR42_RS32615	0.21	-1.6
2,714,443	-		RR42_RS32615	0.23	-0.6
2,714,443	-		RR42_RS32615	0.23	-1.5
2,714,462	-		RR42_RS32615	0.25	+0.0
2,714,527	+		RR42_RS32615	0.33	-0.3
2,714,605	+		RR42_RS32615	0.42	-0.3
2,714,605	+		RR42_RS32615	0.42	-0.5
2,714,606	-		RR42_RS32615	0.43	+1.1
2,714,606	-		RR42_RS32615	0.43	-0.3