Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS32110

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,587,123	+				+0.6
2,587,175	+				+1.0
2,587,176	-				+0.2
2,587,504	+		RR42_RS32105	0.68	-0.6
2,587,504	+		RR42_RS32105	0.68	+0.4
2,587,505	-		RR42_RS32105	0.68	-0.4
2,587,573	-		RR42_RS32105	0.81	-0.9
2,587,573	-		RR42_RS32105	0.81	-0.6
2,587,573	-		RR42_RS32105	0.81	+0.6
2,587,599	-		RR42_RS32105	0.86	-0.6
2,587,629	+				+1.4
2,587,629	+				-1.6
2,587,694	+				-0.6
2,587,750	+				-1.8
2,587,750	+				+1.0
2,588,001	-				-0.1
2,588,001	-				-0.7
2,588,001	-				+0.2
2,588,001	-				+0.5
2,588,001	-				-0.0
2,588,001	-				+0.7
2,588,001	-				-0.4
2,588,003	-				+0.8
2,588,003	-				-0.4
2,588,010	+				-2.9
2,588,011	-				+0.8
2,588,011	-				-0.2
2,588,055	+				-0.2
2,588,055	+				+0.7
2,588,056	-				+0.5
2,588,506	+		RR42_RS32110	0.25	+1.3
2,588,972	-		RR42_RS32110	0.51	-0.7
2,588,972	-		RR42_RS32110	0.51	-1.0
2,589,143	-		RR42_RS32110	0.61	+0.5
2,589,251	-		RR42_RS32110	0.67	-0.2
2,589,479	-		RR42_RS32110	0.80	+0.1
2,589,820	+				-0.9
2,589,821	-				-0.7
2,589,892	+				-0.1
2,589,892	+				+1.5
2,589,893	-				+0.3
2,589,902	+				-0.2
2,589,902	+				-0.6
2,589,903	-				+0.6
2,589,949	-				-0.6
2,590,046	+		RR42_RS32115	0.18	+1.0
2,590,047	-		RR42_RS32115	0.18	+0.7
2,590,050	+		RR42_RS32115	0.19	-0.4
2,590,051	-		RR42_RS32115	0.19	-0.3
2,590,100	+		RR42_RS32115	0.26	-0.1
2,590,100	+		RR42_RS32115	0.26	+0.9
2,590,101	-		RR42_RS32115	0.26	+0.2
2,590,101	-		RR42_RS32115	0.26	-0.8
2,590,102	+		RR42_RS32115	0.26	+0.1
2,590,102	+		RR42_RS32115	0.26	-0.9
2,590,103	-		RR42_RS32115	0.26	-0.8
2,590,277	+		RR42_RS32115	0.52	-1.4
2,590,278	-		RR42_RS32115	0.52	+1.1
2,590,278	-		RR42_RS32115	0.52	-1.9
2,590,374	-		RR42_RS32115	0.66	+1.1
2,590,374	-		RR42_RS32115	0.66	+0.4
2,590,473	+		RR42_RS32115	0.81	+2.2
2,590,473	+		RR42_RS32115	0.81	+0.1
2,590,473	+		RR42_RS32115	0.81	+1.2
2,590,496	+		RR42_RS32115	0.84	-0.0
2,590,497	-		RR42_RS32115	0.84	+0.4
2,590,497	-		RR42_RS32115	0.84	-2.2
2,590,693	-				-1.4
2,590,693	-				-0.5
2,590,727	+		RR42_RS32120	0.19	+0.4
2,590,742	+		RR42_RS32120	0.23	+0.3
2,590,743	-		RR42_RS32120	0.24	-0.5
2,590,763	+		RR42_RS32120	0.29	+1.5
2,590,764	-		RR42_RS32120	0.30	-0.3