Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS29315

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,927,315	+		RR42_RS29310	0.57	+1.2
1,927,315	+		RR42_RS29310	0.57	+0.4
1,927,316	-		RR42_RS29310	0.57	+0.1
1,927,316	-		RR42_RS29310	0.57	+0.9
1,927,385	+		RR42_RS29310	0.62	-0.8
1,927,385	+		RR42_RS29310	0.62	-0.7
1,927,385	+		RR42_RS29310	0.62	-0.3
1,927,385	+		RR42_RS29310	0.62	-1.4
1,927,385	+		RR42_RS29310	0.62	-0.3
1,927,385	+		RR42_RS29310	0.62	+0.1
1,927,385	+		RR42_RS29310	0.62	-0.0
1,927,386	-		RR42_RS29310	0.62	-1.7
1,927,386	-		RR42_RS29310	0.62	-0.5
1,927,386	-		RR42_RS29310	0.62	-0.5
1,927,386	-		RR42_RS29310	0.62	-0.1
1,927,451	+		RR42_RS29310	0.66	-0.3
1,927,495	+		RR42_RS29310	0.69	+0.1
1,927,495	+		RR42_RS29310	0.69	-0.9
1,927,871	+				+0.1
1,927,871	+				-0.7
1,927,872	-				+0.9
1,928,006	-				-1.9
1,928,134	+		RR42_RS29315	0.17	+0.2
1,928,134	+		RR42_RS29315	0.17	-1.4
1,928,135	-		RR42_RS29315	0.17	-0.8
1,928,188	+		RR42_RS29315	0.25	+0.9
1,928,188	+		RR42_RS29315	0.25	+1.5
1,928,189	-		RR42_RS29315	0.26	-0.6
1,928,190	+		RR42_RS29315	0.26	-0.8
1,928,190	+		RR42_RS29315	0.26	-1.9
1,928,190	+		RR42_RS29315	0.26	-2.2
1,928,191	-		RR42_RS29315	0.26	-2.1
1,928,191	-		RR42_RS29315	0.26	-2.1
1,928,194	+		RR42_RS29315	0.26	-0.7
1,928,194	+		RR42_RS29315	0.26	+0.1
1,928,194	+		RR42_RS29315	0.26	-0.2
1,928,195	-		RR42_RS29315	0.27	+0.6
1,928,195	-		RR42_RS29315	0.27	-0.7
1,928,377	+		RR42_RS29315	0.56	-2.1
1,928,533	+		RR42_RS29315	0.81	-0.7
1,928,533	+		RR42_RS29315	0.81	-1.1
1,928,533	+		RR42_RS29315	0.81	-1.7
1,928,534	-		RR42_RS29315	0.82	-0.7
1,928,587	+				-0.3
1,928,707	+				+1.1
1,928,753	+				-0.1
1,928,760	-				+0.3
1,928,760	-				+0.9
1,928,760	-				+1.5
1,928,765	+				-0.1
1,928,765	+				+0.5
1,928,765	+				-0.3
1,928,947	+		RR42_RS29320	0.19	+0.1
1,928,947	+		RR42_RS29320	0.19	+0.5
1,928,947	+		RR42_RS29320	0.19	-0.1
1,928,947	+		RR42_RS29320	0.19	+0.0
1,928,948	-		RR42_RS29320	0.19	-3.1
1,929,148	-		RR42_RS29320	0.37	-0.3
1,929,191	-		RR42_RS29320	0.41	+0.3
1,929,358	+		RR42_RS29320	0.56	+1.0
1,929,358	+		RR42_RS29320	0.56	+0.9
1,929,358	+		RR42_RS29320	0.56	+0.2
1,929,504	+		RR42_RS29320	0.69	+1.1
1,929,504	+		RR42_RS29320	0.69	-0.0
1,929,505	-		RR42_RS29320	0.69	+1.7
1,929,601	+		RR42_RS29320	0.78	+0.4
1,929,602	-		RR42_RS29320	0.78	-0.5