Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28720

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,794,338	+		RR42_RS28715	0.35	+0.2
1,794,506	-		RR42_RS28715	0.53	-0.3
1,794,506	-		RR42_RS28715	0.53	-0.7
1,794,526	-		RR42_RS28715	0.55	-0.8
1,794,586	+		RR42_RS28715	0.61	+1.1
1,794,587	-		RR42_RS28715	0.61	-0.1
1,794,665	+		RR42_RS28715	0.70	+0.2
1,794,666	-		RR42_RS28715	0.70	+0.2
1,794,666	-		RR42_RS28715	0.70	-0.2
1,794,666	-		RR42_RS28715	0.70	+0.2
1,794,777	+		RR42_RS28715	0.82	+0.4
1,794,778	-		RR42_RS28715	0.82	+0.2
1,794,778	-		RR42_RS28715	0.82	-0.1
1,794,891	+				-0.1
1,794,891	+				+1.6
1,794,892	-				-0.5
1,795,001	+				+0.7
1,795,002	-				-0.0
1,795,036	+				+0.9
1,795,061	+				-0.3
1,795,061	+				-0.2
1,795,061	+				+0.2
1,795,062	-				+0.4
1,795,073	+				+0.1
1,795,074	-				+2.2
1,795,116	+				+1.1
1,795,259	+		RR42_RS28720	0.37	-1.4
1,795,353	-		RR42_RS28720	0.57	-1.0
1,795,491	+		RR42_RS28720	0.86	-0.1
1,795,531	-				+0.6
1,795,531	-				+0.4
1,795,881	+				+0.7
1,795,882	-				+0.2
1,795,882	-				-1.0
1,795,882	-				+0.1
1,795,909	+				-0.7
1,796,041	+		RR42_RS28725	0.23	-1.2
1,796,175	+		RR42_RS28725	0.39	+0.2
1,796,175	+		RR42_RS28725	0.39	-0.3
1,796,175	+		RR42_RS28725	0.39	+0.9
1,796,176	-		RR42_RS28725	0.39	+0.7
1,796,176	-		RR42_RS28725	0.39	-0.2
1,796,176	-		RR42_RS28725	0.39	+0.5
1,796,408	-		RR42_RS28725	0.66	-0.9
1,796,505	+		RR42_RS28725	0.77	-0.5
1,796,505	+		RR42_RS28725	0.77	+0.1
1,796,505	+		RR42_RS28725	0.77	+0.0
1,796,505	+		RR42_RS28725	0.77	+0.2
1,796,506	-		RR42_RS28725	0.77	-0.2
1,796,506	-		RR42_RS28725	0.77	+0.9
1,796,506	-		RR42_RS28725	0.77	-0.0
1,796,506	-		RR42_RS28725	0.77	+0.4
1,796,506	-		RR42_RS28725	0.77	-0.2
1,796,514	+		RR42_RS28725	0.78	-1.1
1,796,514	+		RR42_RS28725	0.78	-0.9
1,796,514	+		RR42_RS28725	0.78	-0.5
1,796,515	-		RR42_RS28725	0.78	+0.5
1,796,515	-		RR42_RS28725	0.78	+0.1
1,796,515	-		RR42_RS28725	0.78	-2.0