Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS28540

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,756,958	+		RR42_RS28530	0.79	-0.4
1,756,958	+		RR42_RS28530	0.79	+1.5
1,756,959	-		RR42_RS28530	0.79	+1.9
1,756,980	+		RR42_RS28530	0.82	+0.5
1,756,981	-		RR42_RS28530	0.82	+0.0
1,757,028	+		RR42_RS28530	0.88	+0.9
1,757,079	+				-0.7
1,757,080	-				-0.8
1,757,254	-				-0.9
1,757,495	-		RR42_RS28535	0.53	-0.2
1,757,495	-		RR42_RS28535	0.53	+0.1
1,757,569	+		RR42_RS28535	0.69	+1.7
1,757,569	+		RR42_RS28535	0.69	+0.5
1,757,569	+		RR42_RS28535	0.69	-0.5
1,757,569	+		RR42_RS28535	0.69	+0.4
1,757,569	+		RR42_RS28535	0.69	-0.7
1,757,570	-		RR42_RS28535	0.69	+0.2
1,757,570	-		RR42_RS28535	0.69	+0.4
1,757,570	-		RR42_RS28535	0.69	-0.2
1,757,570	-		RR42_RS28535	0.69	-0.1
1,757,711	-				+0.1
1,757,826	+				+0.4
1,757,826	+				+0.2
1,757,827	-				+0.4
1,757,899	-				+0.6
1,758,002	+		RR42_RS28540	0.13	+0.9
1,758,052	-		RR42_RS28540	0.17	+1.9
1,758,238	-		RR42_RS28540	0.31	+0.9
1,758,248	+		RR42_RS28540	0.32	-2.3
1,758,248	+		RR42_RS28540	0.32	+0.4
1,758,248	+		RR42_RS28540	0.32	+0.1
1,758,248	+		RR42_RS28540	0.32	+0.9
1,758,248	+		RR42_RS28540	0.32	-1.6
1,758,249	-		RR42_RS28540	0.32	+0.8
1,758,249	-		RR42_RS28540	0.32	-1.0
1,758,249	-		RR42_RS28540	0.32	+0.5
1,758,252	+		RR42_RS28540	0.32	+4.5
1,758,253	-		RR42_RS28540	0.33	+0.2
1,758,348	+		RR42_RS28540	0.40	+1.1
1,758,349	-		RR42_RS28540	0.40	+0.7
1,758,349	-		RR42_RS28540	0.40	-0.1
1,758,456	-		RR42_RS28540	0.49	+0.8
1,758,456	-		RR42_RS28540	0.49	-0.4
1,758,657	+		RR42_RS28540	0.65	-1.9
1,758,666	+		RR42_RS28540	0.65	+0.6
1,758,667	-		RR42_RS28540	0.65	+0.3
1,758,750	+		RR42_RS28540	0.72	+0.4
1,758,750	+		RR42_RS28540	0.72	+0.3
1,758,828	+		RR42_RS28540	0.78	-0.8
1,758,828	+		RR42_RS28540	0.78	-2.9
1,758,828	+		RR42_RS28540	0.78	+1.9
1,758,828	+		RR42_RS28540	0.78	+0.2
1,758,829	-		RR42_RS28540	0.78	+1.5
1,758,829	-		RR42_RS28540	0.78	+0.3
1,758,831	-		RR42_RS28540	0.79	-1.1
1,758,942	+		RR42_RS28540	0.87	+0.1
1,758,943	-		RR42_RS28540	0.87	-0.4
1,758,954	+		RR42_RS28540	0.88	-0.7
1,759,112	+				-0.5
1,759,112	+				-0.1
1,759,113	-				-0.1
1,759,460	+		RR42_RS28545	0.26	+1.1
1,759,780	+		RR42_RS28545	0.54	+0.9
1,759,780	+		RR42_RS28545	0.54	+1.3
1,759,781	-		RR42_RS28545	0.54	+0.9
1,759,781	-		RR42_RS28545	0.54	+0.8
1,759,781	-		RR42_RS28545	0.54	+0.9
1,759,970	-		RR42_RS28545	0.70	-0.0
1,760,050	+		RR42_RS28545	0.77	-0.6
1,760,051	-		RR42_RS28545	0.77	-0.3