Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26185 and RR42_RS26195 are separated by 885 nucleotides RR42_RS26195 and RR42_RS26200 overlap by 4 nucleotides RR42_RS26200 and RR42_RS26205 are separated by 125 nucleotides
RR42_RS26185: RR42_RS26185 - hypothetical protein, at 1,232,815 to 1,234,317
_RS26185
RR42_RS26195: RR42_RS26195 - hypothetical protein, at 1,235,203 to 1,236,510
_RS26195
RR42_RS26200: RR42_RS26200 - hypothetical protein, at 1,236,507 to 1,237,139
_RS26200
RR42_RS26205: RR42_RS26205 - LysR family transcriptional regulator, at 1,237,265 to 1,238,263
_RS26205
Position (kb)
1235
1236
1237 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1234.550 kb on + strand at 1234.550 kb on + strand at 1234.551 kb on - strand at 1234.551 kb on - strand at 1234.551 kb on - strand at 1234.621 kb on + strand at 1234.622 kb on - strand at 1234.792 kb on + strand at 1234.793 kb on - strand at 1234.836 kb on + strand at 1234.836 kb on + strand at 1234.837 kb on - strand at 1235.013 kb on + strand at 1235.306 kb on + strand at 1235.423 kb on + strand, within RR42_RS26195 at 1235.489 kb on + strand, within RR42_RS26195 at 1235.505 kb on - strand, within RR42_RS26195 at 1235.583 kb on + strand, within RR42_RS26195 at 1235.583 kb on + strand, within RR42_RS26195 at 1235.583 kb on + strand, within RR42_RS26195 at 1235.584 kb on - strand, within RR42_RS26195 at 1235.584 kb on - strand, within RR42_RS26195 at 1235.584 kb on - strand, within RR42_RS26195 at 1236.287 kb on + strand, within RR42_RS26195 at 1236.327 kb on + strand, within RR42_RS26195 at 1236.327 kb on + strand, within RR42_RS26195 at 1236.327 kb on + strand, within RR42_RS26195 at 1236.328 kb on - strand, within RR42_RS26195 at 1236.328 kb on - strand, within RR42_RS26195 at 1236.328 kb on - strand, within RR42_RS26195 at 1236.328 kb on - strand, within RR42_RS26195 at 1236.328 kb on - strand, within RR42_RS26195 at 1236.469 kb on + strand at 1236.470 kb on - strand at 1236.664 kb on + strand at 1236.843 kb on - strand, within RR42_RS26200 at 1237.101 kb on + strand at 1237.101 kb on + strand at 1237.102 kb on - strand at 1237.160 kb on - strand at 1237.160 kb on - strand at 1237.204 kb on - strand at 1237.204 kb on - strand at 1237.205 kb on + strand at 1237.206 kb on - strand at 1237.206 kb on - strand at 1237.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 1,234,550 + -1.6 1,234,550 + +0.2 1,234,551 - +0.4 1,234,551 - +0.7 1,234,551 - -0.3 1,234,621 + -0.1 1,234,622 - +1.5 1,234,792 + -0.9 1,234,793 - -0.3 1,234,836 + -0.0 1,234,836 + +0.5 1,234,837 - +0.4 1,235,013 + -0.8 1,235,306 + -0.2 1,235,423 + RR42_RS26195 0.17 -1.0 1,235,489 + RR42_RS26195 0.22 +0.3 1,235,505 - RR42_RS26195 0.23 -3.0 1,235,583 + RR42_RS26195 0.29 +1.4 1,235,583 + RR42_RS26195 0.29 -0.0 1,235,583 + RR42_RS26195 0.29 +2.2 1,235,584 - RR42_RS26195 0.29 -0.3 1,235,584 - RR42_RS26195 0.29 -0.7 1,235,584 - RR42_RS26195 0.29 +0.3 1,236,287 + RR42_RS26195 0.83 -1.0 1,236,327 + RR42_RS26195 0.86 +0.7 1,236,327 + RR42_RS26195 0.86 -0.8 1,236,327 + RR42_RS26195 0.86 +0.9 1,236,328 - RR42_RS26195 0.86 -0.9 1,236,328 - RR42_RS26195 0.86 -0.2 1,236,328 - RR42_RS26195 0.86 -0.9 1,236,328 - RR42_RS26195 0.86 -0.2 1,236,328 - RR42_RS26195 0.86 +0.1 1,236,469 + -0.0 1,236,470 - -0.9 1,236,664 + -0.0 1,236,843 - RR42_RS26200 0.53 -1.4 1,237,101 + +1.7 1,237,101 + +0.6 1,237,102 - -0.3 1,237,160 - +0.8 1,237,160 - -0.1 1,237,204 - -1.1 1,237,204 - -0.1 1,237,205 + -0.2 1,237,206 - +0.2 1,237,206 - -0.1 1,237,206 - -0.1
Or see this region's nucleotide sequence