Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25960

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,165,312	-		RR42_RS25950	0.84	-0.0
1,165,332	+		RR42_RS25950	0.85	+1.0
1,165,332	+		RR42_RS25950	0.85	-0.3
1,165,353	+		RR42_RS25950	0.87	+2.0
1,165,354	-		RR42_RS25950	0.87	+0.2
1,165,354	-		RR42_RS25950	0.87	+0.7
1,165,354	-		RR42_RS25950	0.87	+0.2
1,165,937	-				-0.4
1,165,937	-				+0.0
1,166,011	-				-0.6
1,166,038	+				-0.3
1,166,038	+				+0.1
1,166,039	-				+0.0
1,166,039	-				-0.0
1,166,047	-				-0.4
1,166,047	-				+0.0
1,166,190	-				+0.9
1,166,249	+				-1.3
1,166,251	+				-0.4
1,166,251	+				-1.2
1,166,252	-				+0.9
1,166,252	-				-0.3
1,166,252	-				-0.1
1,166,319	+				+0.0
1,166,320	-				-0.9
1,166,820	+		RR42_RS25960	0.12	+0.6
1,166,821	-		RR42_RS25960	0.12	+0.3
1,166,821	-		RR42_RS25960	0.12	+0.1
1,166,880	+		RR42_RS25960	0.13	+0.8
1,166,902	-		RR42_RS25960	0.14	-0.2
1,167,363	+		RR42_RS25960	0.25	+0.5
1,167,423	+		RR42_RS25960	0.26	+0.7
1,167,423	+		RR42_RS25960	0.26	+0.3
1,167,423	+		RR42_RS25960	0.26	-0.4
1,167,423	+		RR42_RS25960	0.26	+0.5
1,167,424	-		RR42_RS25960	0.26	+1.0
1,167,424	-		RR42_RS25960	0.26	-0.2
1,168,029	-		RR42_RS25960	0.40	-0.0
1,168,176	+		RR42_RS25960	0.43	-0.0
1,168,176	+		RR42_RS25960	0.43	-0.3
1,168,177	-		RR42_RS25960	0.43	-1.2
1,168,230	+		RR42_RS25960	0.45	-0.7
1,168,301	+		RR42_RS25960	0.46	+0.1
1,168,301	+		RR42_RS25960	0.46	+0.5
1,168,301	+		RR42_RS25960	0.46	+0.7
1,168,301	+		RR42_RS25960	0.46	+0.2
1,168,301	+		RR42_RS25960	0.46	-0.0
1,168,301	+		RR42_RS25960	0.46	-2.4
1,168,301	+		RR42_RS25960	0.46	+0.7
1,168,302	-		RR42_RS25960	0.46	-0.8
1,168,302	-		RR42_RS25960	0.46	-0.7
1,168,302	-		RR42_RS25960	0.46	-0.2
1,168,302	-		RR42_RS25960	0.46	-0.3
1,168,416	+		RR42_RS25960	0.49	+0.1
1,168,417	-		RR42_RS25960	0.49	-1.5
1,168,417	-		RR42_RS25960	0.49	-0.3
1,168,417	-		RR42_RS25960	0.49	-0.9
1,168,538	+		RR42_RS25960	0.52	-2.0
1,168,560	+		RR42_RS25960	0.52	+1.1
1,168,560	+		RR42_RS25960	0.52	-0.3
1,168,560	+		RR42_RS25960	0.52	+0.9
1,168,561	-		RR42_RS25960	0.52	-0.7
1,168,561	-		RR42_RS25960	0.52	+0.2
1,168,684	-		RR42_RS25960	0.55	-0.7
1,168,768	+		RR42_RS25960	0.57	+0.8
1,168,769	-		RR42_RS25960	0.57	+0.3
1,168,783	-		RR42_RS25960	0.58	-0.7
1,168,803	+		RR42_RS25960	0.58	-0.9
1,169,097	+		RR42_RS25960	0.65	-1.1
1,169,098	-		RR42_RS25960	0.65	-0.1
1,169,154	+		RR42_RS25960	0.66	-0.0
1,169,155	-		RR42_RS25960	0.66	-0.9
1,169,306	+		RR42_RS25960	0.70	-0.5
1,169,310	+		RR42_RS25960	0.70	+0.6
1,169,310	+		RR42_RS25960	0.70	+0.1
1,169,310	+		RR42_RS25960	0.70	-0.2
1,169,310	+		RR42_RS25960	0.70	+0.5
1,169,310	+		RR42_RS25960	0.70	+1.4
1,169,310	+		RR42_RS25960	0.70	+0.8
1,169,311	-		RR42_RS25960	0.70	-0.8
1,169,311	-		RR42_RS25960	0.70	+1.2
1,169,311	-		RR42_RS25960	0.70	-0.0
1,169,311	-		RR42_RS25960	0.70	-1.4
1,169,312	+		RR42_RS25960	0.70	-0.6
1,169,312	+		RR42_RS25960	0.70	-0.6
1,169,380	+		RR42_RS25960	0.71	+0.6
1,169,381	-		RR42_RS25960	0.71	+0.8
1,169,381	-		RR42_RS25960	0.71	+0.2
1,169,550	+		RR42_RS25960	0.75	+1.1
1,169,550	+		RR42_RS25960	0.75	+1.0
1,169,730	-		RR42_RS25960	0.79	-0.2
1,169,823	+		RR42_RS25960	0.82	+0.6
1,169,824	-		RR42_RS25960	0.82	-0.5
1,169,824	-		RR42_RS25960	0.82	+0.7
1,169,824	-		RR42_RS25960	0.82	+0.1
1,169,964	+		RR42_RS25960	0.85	+0.5
1,169,964	+		RR42_RS25960	0.85	-0.5
1,169,965	-		RR42_RS25960	0.85	-0.6
1,169,965	-		RR42_RS25960	0.85	-1.5
1,169,965	-		RR42_RS25960	0.85	-1.0
1,170,361	+				+0.1
1,170,361	+				+0.5
1,170,362	-				+0.5
1,170,432	+				+1.0
1,170,432	+				-0.4
1,170,433	-				+0.7
1,170,433	-				-0.4
1,170,648	-				+0.2
1,170,648	-				+1.0
1,170,658	+				+0.1
1,170,658	+				+1.1
1,170,659	-				+0.4
1,170,659	-				+0.0
1,170,659	-				+0.1
1,170,718	+				-0.6
1,170,721	+				+0.2
1,170,722	-				-0.6
1,170,759	+				-0.1
1,170,759	+				+0.5
1,170,759	+				-0.4
1,170,786	+				+0.6
1,170,787	-				-0.6
1,170,807	+				+0.1
1,170,808	-				-0.2
1,171,209	-		RR42_RS25965	0.44	-1.3
1,171,209	-		RR42_RS25965	0.44	-1.0
1,171,209	-		RR42_RS25965	0.44	+0.5
1,171,217	-		RR42_RS25965	0.45	-1.7
1,171,217	-		RR42_RS25965	0.45	-0.3
1,171,592	-				+0.4
1,171,605	+				+1.2