Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25935

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,157,870	+		RR42_RS25930	0.33	-0.5
1,157,870	+		RR42_RS25930	0.33	+0.4
1,157,874	+		RR42_RS25930	0.33	-0.4
1,157,874	+		RR42_RS25930	0.33	+0.4
1,158,000	+		RR42_RS25930	0.43	-0.6
1,158,003	+		RR42_RS25930	0.43	-0.6
1,158,003	+		RR42_RS25930	0.43	+1.0
1,158,003	+		RR42_RS25930	0.43	+0.6
1,158,003	+		RR42_RS25930	0.43	+0.5
1,158,013	-		RR42_RS25930	0.44	+0.0
1,158,013	-		RR42_RS25930	0.44	+0.0
1,158,103	-		RR42_RS25930	0.51	-0.0
1,158,264	+		RR42_RS25930	0.64	+1.3
1,158,264	+		RR42_RS25930	0.64	+0.1
1,158,264	+		RR42_RS25930	0.64	-1.0
1,158,803	-				+0.8
1,158,878	+				-1.1
1,158,878	+				+1.0
1,158,882	+				+0.0
1,158,882	+				+0.3
1,159,375	-		RR42_RS25935	0.25	-0.0
1,159,375	-		RR42_RS25935	0.25	-0.1
1,159,798	-		RR42_RS25935	0.42	-1.0
1,159,837	-		RR42_RS25935	0.44	-0.3
1,159,863	+		RR42_RS25935	0.45	-0.9
1,159,863	+		RR42_RS25935	0.45	-0.0
1,159,863	+		RR42_RS25935	0.45	-0.1
1,159,864	-		RR42_RS25935	0.45	+1.0
1,160,021	+		RR42_RS25935	0.51	-0.0
1,160,037	-		RR42_RS25935	0.52	+0.2
1,160,051	+		RR42_RS25935	0.52	+0.2
1,160,052	-		RR42_RS25935	0.52	+1.0
1,160,052	-		RR42_RS25935	0.52	-2.0
1,161,122	+				-0.5
1,161,123	-				+0.1
1,161,123	-				+0.4
1,161,355	+				-1.6
1,161,356	-				+0.6
1,161,357	+				-0.2
1,161,357	+				-0.2
1,161,357	+				+0.0
1,161,358	-				-0.6
1,161,436	-				-0.6
1,161,436	-				+0.7
1,161,436	-				+1.0
1,161,436	-				+0.2
1,161,436	-				-0.2
1,161,436	-				-1.8
1,161,438	-				-0.1
1,161,590	-				-1.2
1,161,764	+		RR42_RS25940	0.17	-0.6
1,161,764	+		RR42_RS25940	0.17	+1.3
1,161,872	+		RR42_RS25940	0.29	-0.5
1,161,872	+		RR42_RS25940	0.29	-0.0
1,161,872	+		RR42_RS25940	0.29	+2.2
1,161,882	+		RR42_RS25940	0.30	-0.9
1,161,882	+		RR42_RS25940	0.30	-1.0
1,161,882	+		RR42_RS25940	0.30	-0.0
1,161,882	+		RR42_RS25940	0.30	+0.2
1,161,882	+		RR42_RS25940	0.30	+0.5
1,161,882	+		RR42_RS25940	0.30	-0.0
1,161,883	-		RR42_RS25940	0.30	-0.4
1,161,908	+		RR42_RS25940	0.33	-0.4
1,161,908	+		RR42_RS25940	0.33	-0.9
1,161,909	-		RR42_RS25940	0.33	-1.2
1,161,988	+		RR42_RS25940	0.42	+0.1
1,161,988	+		RR42_RS25940	0.42	+0.2
1,161,989	-		RR42_RS25940	0.42	+2.7
1,162,141	-		RR42_RS25940	0.58	+0.3
1,162,141	-		RR42_RS25940	0.58	-0.3
1,162,141	-		RR42_RS25940	0.58	-0.0