Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS25655

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,097,089	+				-2.3
1,097,089	+				-2.2
1,097,089	+				-1.4
1,097,097	-				-0.6
1,097,250	+		RR42_RS25645	0.79	-0.8
1,097,250	+		RR42_RS25645	0.79	-0.6
1,097,251	-		RR42_RS25645	0.80	-0.5
1,097,251	-		RR42_RS25645	0.80	-0.4
1,097,294	+				-0.3
1,097,295	-				-0.6
1,097,295	-				-1.0
1,097,295	-				+0.2
1,097,338	+				-0.0
1,097,338	+				+0.1
1,097,338	+				-0.0
1,097,339	-				+0.0
1,097,339	-				-0.2
1,097,460	-				+0.3
1,097,610	-				-0.6
1,097,610	-				+0.2
1,097,610	-				-0.7
1,097,613	-				-0.3
1,097,613	-				-0.4
1,097,704	+		RR42_RS25650	0.49	-2.6
1,097,704	+		RR42_RS25650	0.49	+0.2
1,097,798	+				-0.4
1,097,799	-				-2.7
1,097,799	-				+0.3
1,097,901	+				-0.2
1,097,908	+				+0.8
1,097,908	+				+0.0
1,097,989	-				+0.7
1,098,000	-				-0.9
1,098,007	+				+1.0
1,098,059	-				+0.1
1,098,095	-				+0.1
1,098,508	+		RR42_RS25655	0.17	-1.0
1,098,508	+		RR42_RS25655	0.17	+1.0
1,098,508	+		RR42_RS25655	0.17	-1.4
1,098,509	-		RR42_RS25655	0.17	+0.5
1,098,509	-		RR42_RS25655	0.17	+0.6
1,098,589	+		RR42_RS25655	0.20	-0.3
1,098,589	+		RR42_RS25655	0.20	+1.8
1,098,590	-		RR42_RS25655	0.20	+0.7
1,098,590	-		RR42_RS25655	0.20	+0.3
1,098,603	+		RR42_RS25655	0.20	+1.2
1,098,604	-		RR42_RS25655	0.20	+2.0
1,098,604	-		RR42_RS25655	0.20	-0.6
1,098,772	+		RR42_RS25655	0.25	-0.3
1,098,772	+		RR42_RS25655	0.25	-0.2
1,098,773	-		RR42_RS25655	0.25	+0.4
1,098,810	+		RR42_RS25655	0.26	+0.4
1,098,811	-		RR42_RS25655	0.26	+0.0
1,098,811	-		RR42_RS25655	0.26	-0.0
1,099,030	+		RR42_RS25655	0.32	-0.6
1,099,123	+		RR42_RS25655	0.35	-0.2
1,099,366	+		RR42_RS25655	0.42	+1.7
1,099,624	-		RR42_RS25655	0.49	-0.4
1,099,825	+		RR42_RS25655	0.55	-0.3
1,099,825	+		RR42_RS25655	0.55	+0.2
1,099,826	-		RR42_RS25655	0.55	+0.1
1,100,018	-		RR42_RS25655	0.60	-0.1
1,100,018	-		RR42_RS25655	0.60	-1.0
1,100,029	+		RR42_RS25655	0.61	-0.6
1,100,029	+		RR42_RS25655	0.61	+0.7
1,100,030	-		RR42_RS25655	0.61	+0.1
1,100,030	-		RR42_RS25655	0.61	+2.5
1,100,032	+		RR42_RS25655	0.61	+0.4
1,100,033	-		RR42_RS25655	0.61	+0.5
1,100,287	-		RR42_RS25655	0.68	-0.5
1,100,372	-		RR42_RS25655	0.70	+0.1
1,100,372	-		RR42_RS25655	0.70	+0.2
1,100,372	-		RR42_RS25655	0.70	+0.1
1,100,372	-		RR42_RS25655	0.70	-0.2
1,100,384	+		RR42_RS25655	0.71	+0.3
1,100,393	-		RR42_RS25655	0.71	+1.0
1,100,395	+		RR42_RS25655	0.71	+2.0
1,100,395	+		RR42_RS25655	0.71	-1.4
1,100,536	+		RR42_RS25655	0.75	-2.5
1,100,537	-		RR42_RS25655	0.75	-0.4
1,100,894	-		RR42_RS25655	0.85	+0.6
1,100,936	-		RR42_RS25655	0.86	-0.1
1,100,938	-		RR42_RS25655	0.86	-0.5
1,100,938	-		RR42_RS25655	0.86	+1.1
1,100,943	+		RR42_RS25655	0.87	+1.5
1,101,352	-				+0.2
1,101,456	+				+0.0
1,101,457	-				-1.5
1,101,642	-		RR42_RS25660	0.33	+1.3
1,101,663	+		RR42_RS25660	0.36	-0.0
1,101,664	-		RR42_RS25660	0.36	+2.4
1,101,673	-		RR42_RS25660	0.38	+0.2
1,101,732	+		RR42_RS25660	0.46	+1.0
1,101,994	-		RR42_RS25660	0.85	+1.0
1,102,072	-				+0.1
1,102,143	+				-0.2
1,102,144	-				+0.3
1,102,388	+				+0.5
1,102,389	-				+0.8
1,102,389	-				-0.3