Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24600 and RR42_RS24605 are separated by 333 nucleotides RR42_RS24605 and RR42_RS24610 are separated by 815 nucleotides
RR42_RS24600: RR42_RS24600 - phytanoyl-CoA dioxygenase, at 854,197 to 855,027
_RS24600
RR42_RS24605: RR42_RS24605 - TetR family transcriptional regulator, at 855,361 to 856,794
_RS24605
RR42_RS24610: RR42_RS24610 - FAD-dependent oxidoreductase, at 857,610 to 858,983
_RS24610
Position (kb) 855
856
857 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 854.377 kb on + strand, within RR42_RS24600 at 854.378 kb on - strand, within RR42_RS24600 at 854.548 kb on + strand, within RR42_RS24600 at 854.548 kb on + strand, within RR42_RS24600 at 854.549 kb on - strand, within RR42_RS24600 at 854.657 kb on - strand, within RR42_RS24600 at 854.664 kb on + strand, within RR42_RS24600 at 854.665 kb on - strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.691 kb on + strand, within RR42_RS24600 at 854.693 kb on - strand, within RR42_RS24600 at 854.875 kb on - strand, within RR42_RS24600 at 854.956 kb on - strand at 855.007 kb on + strand at 855.059 kb on - strand at 855.168 kb on + strand at 855.168 kb on + strand at 855.169 kb on - strand at 855.169 kb on - strand at 855.281 kb on - strand at 855.333 kb on - strand at 855.378 kb on + strand at 855.594 kb on - strand, within RR42_RS24605 at 855.609 kb on - strand, within RR42_RS24605 at 855.609 kb on - strand, within RR42_RS24605 at 855.762 kb on - strand, within RR42_RS24605 at 855.774 kb on - strand, within RR42_RS24605 at 855.830 kb on + strand, within RR42_RS24605 at 855.897 kb on - strand, within RR42_RS24605 at 856.027 kb on + strand, within RR42_RS24605 at 856.039 kb on + strand, within RR42_RS24605 at 856.040 kb on - strand, within RR42_RS24605 at 856.040 kb on - strand, within RR42_RS24605 at 856.160 kb on - strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.193 kb on + strand, within RR42_RS24605 at 856.351 kb on - strand, within RR42_RS24605 at 856.514 kb on + strand, within RR42_RS24605 at 856.515 kb on - strand, within RR42_RS24605 at 856.536 kb on + strand, within RR42_RS24605 at 856.537 kb on - strand, within RR42_RS24605 at 856.538 kb on + strand, within RR42_RS24605 at 856.584 kb on - strand, within RR42_RS24605 at 856.587 kb on - strand, within RR42_RS24605 at 856.625 kb on - strand, within RR42_RS24605 at 856.633 kb on + strand, within RR42_RS24605 at 856.816 kb on - strand at 856.835 kb on + strand at 856.836 kb on - strand at 856.893 kb on - strand at 856.936 kb on + strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 856.993 kb on - strand at 857.124 kb on - strand at 857.178 kb on + strand at 857.383 kb on + strand at 857.384 kb on - strand at 857.670 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 854,377 + RR42_RS24600 0.22 +1.5 854,378 - RR42_RS24600 0.22 -2.9 854,548 + RR42_RS24600 0.42 -0.9 854,548 + RR42_RS24600 0.42 +0.6 854,549 - RR42_RS24600 0.42 +1.8 854,657 - RR42_RS24600 0.55 +1.1 854,664 + RR42_RS24600 0.56 +1.4 854,665 - RR42_RS24600 0.56 -0.1 854,691 + RR42_RS24600 0.59 +0.3 854,691 + RR42_RS24600 0.59 +0.1 854,691 + RR42_RS24600 0.59 -1.3 854,693 - RR42_RS24600 0.60 +0.4 854,875 - RR42_RS24600 0.82 -0.8 854,956 - +0.1 855,007 + -1.3 855,059 - +0.4 855,168 + -0.0 855,168 + +0.1 855,169 - +0.4 855,169 - -0.1 855,281 - +0.7 855,333 - +0.4 855,378 + +1.6 855,594 - RR42_RS24605 0.16 -2.1 855,609 - RR42_RS24605 0.17 -3.1 855,609 - RR42_RS24605 0.17 -0.9 855,762 - RR42_RS24605 0.28 -0.5 855,774 - RR42_RS24605 0.29 -0.5 855,830 + RR42_RS24605 0.33 -0.8 855,897 - RR42_RS24605 0.37 -1.8 856,027 + RR42_RS24605 0.46 -1.6 856,039 + RR42_RS24605 0.47 -1.1 856,040 - RR42_RS24605 0.47 -0.6 856,040 - RR42_RS24605 0.47 +0.2 856,160 - RR42_RS24605 0.56 -0.4 856,193 + RR42_RS24605 0.58 -1.8 856,193 + RR42_RS24605 0.58 -0.6 856,193 + RR42_RS24605 0.58 -0.7 856,351 - RR42_RS24605 0.69 -0.7 856,514 + RR42_RS24605 0.80 -1.9 856,515 - RR42_RS24605 0.80 -0.8 856,536 + RR42_RS24605 0.82 -0.4 856,537 - RR42_RS24605 0.82 -1.8 856,538 + RR42_RS24605 0.82 -1.1 856,584 - RR42_RS24605 0.85 -1.4 856,587 - RR42_RS24605 0.85 -0.1 856,625 - RR42_RS24605 0.88 -0.7 856,633 + RR42_RS24605 0.89 -3.3 856,816 - +0.5 856,835 + -0.6 856,836 - +0.0 856,893 - -0.2 856,936 + +0.2 856,993 - -1.3 856,993 - +0.8 856,993 - -2.8 856,993 - -0.3 856,993 - -0.6 857,124 - -0.8 857,178 + -1.2 857,383 + -0.4 857,384 - -1.0 857,670 + +1.2
Or see this region's nucleotide sequence