Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23630 and RR42_RS23635 are separated by 293 nucleotides RR42_RS23635 and RR42_RS23640 are separated by 1 nucleotides RR42_RS23640 and RR42_RS23645 are separated by 50 nucleotides
RR42_RS23630: RR42_RS23630 - hypothetical protein, at 627,967 to 628,956
_RS23630
RR42_RS23635: RR42_RS23635 - flagellar assembly protein FliT, at 629,250 to 629,585
_RS23635
RR42_RS23640: RR42_RS23640 - flagellar biosynthesis protein FliS, at 629,587 to 630,033
_RS23640
RR42_RS23645: RR42_RS23645 - flagellar hook protein, at 630,084 to 631,514
_RS23645
Position (kb) 629
630
631 Strain fitness (log2 ratio) -2
-1
0
1 at 628.706 kb on + strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.707 kb on - strand, within RR42_RS23630 at 628.721 kb on - strand, within RR42_RS23630 at 628.845 kb on - strand, within RR42_RS23630 at 629.022 kb on + strand at 629.023 kb on - strand at 629.212 kb on + strand at 629.212 kb on + strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.213 kb on - strand at 629.266 kb on + strand at 629.267 kb on - strand at 629.464 kb on + strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.465 kb on - strand, within RR42_RS23635 at 629.538 kb on + strand, within RR42_RS23635 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.762 kb on + strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640 at 629.763 kb on - strand, within RR42_RS23640 at 630.005 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.029 kb on + strand at 630.030 kb on - strand at 630.127 kb on + strand at 630.127 kb on + strand at 630.188 kb on - strand at 630.229 kb on + strand, within RR42_RS23645 at 630.279 kb on - strand, within RR42_RS23645 at 630.634 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.850 kb on + strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.851 kb on - strand, within RR42_RS23645 at 630.959 kb on - strand, within RR42_RS23645
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 628,706 + RR42_RS23630 0.75 -0.3 628,707 - RR42_RS23630 0.75 -0.2 628,707 - RR42_RS23630 0.75 -0.4 628,707 - RR42_RS23630 0.75 +1.5 628,721 - RR42_RS23630 0.76 -0.1 628,845 - RR42_RS23630 0.89 -0.2 629,022 + +0.1 629,023 - -0.9 629,212 + +0.8 629,212 + -1.4 629,213 - -0.0 629,213 - -0.7 629,213 - -0.8 629,213 - -0.1 629,266 + +0.7 629,267 - -0.9 629,464 + RR42_RS23635 0.64 +0.5 629,465 - RR42_RS23635 0.64 -1.7 629,465 - RR42_RS23635 0.64 -0.5 629,538 + RR42_RS23635 0.86 -0.1 629,762 + RR42_RS23640 0.39 -0.0 629,762 + RR42_RS23640 0.39 -1.9 629,762 + RR42_RS23640 0.39 -0.5 629,762 + RR42_RS23640 0.39 -1.5 629,763 - RR42_RS23640 0.39 -0.3 629,763 - RR42_RS23640 0.39 -1.2 630,005 + +0.1 630,029 + -0.6 630,029 + +0.5 630,029 + -0.2 630,030 - -0.0 630,127 + -0.1 630,127 + -0.8 630,188 - +0.4 630,229 + RR42_RS23645 0.10 +0.2 630,279 - RR42_RS23645 0.14 -0.2 630,634 + RR42_RS23645 0.38 +0.2 630,850 + RR42_RS23645 0.54 -0.2 630,850 + RR42_RS23645 0.54 +1.2 630,851 - RR42_RS23645 0.54 +1.1 630,851 - RR42_RS23645 0.54 +0.1 630,851 - RR42_RS23645 0.54 +0.1 630,851 - RR42_RS23645 0.54 +0.8 630,851 - RR42_RS23645 0.54 -0.1 630,851 - RR42_RS23645 0.54 -0.5 630,959 - RR42_RS23645 0.61 -0.3
Or see this region's nucleotide sequence