Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23595

Experiment: R2A with Sisomicin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23590 and RR42_RS23595 are separated by 187 nucleotidesRR42_RS23595 and RR42_RS23600 overlap by 4 nucleotides RR42_RS23590: RR42_RS23590 - FkbM family methyltransferase, at 617,882 to 618,952 _RS23590 RR42_RS23595: RR42_RS23595 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 619,140 to 619,685 _RS23595 RR42_RS23600: RR42_RS23600 - SAM-dependent methyltransferase, at 619,682 to 620,965 _RS23600 Position (kb) 619 620Strain fitness (log2 ratio) -2 -1 0 1 2 3at 618.175 kb on - strand, within RR42_RS23590at 618.175 kb on - strand, within RR42_RS23590at 618.322 kb on - strand, within RR42_RS23590at 618.591 kb on + strand, within RR42_RS23590at 618.592 kb on - strand, within RR42_RS23590at 618.592 kb on - strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.665 kb on + strand, within RR42_RS23590at 618.666 kb on - strand, within RR42_RS23590at 618.666 kb on - strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.783 kb on + strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590at 618.784 kb on - strand, within RR42_RS23590at 619.120 kb on + strandat 619.291 kb on + strand, within RR42_RS23595at 619.292 kb on - strand, within RR42_RS23595at 619.292 kb on - strand, within RR42_RS23595at 619.351 kb on + strand, within RR42_RS23595at 619.402 kb on + strand, within RR42_RS23595at 619.415 kb on - strand, within RR42_RS23595at 619.798 kb on - strandat 619.896 kb on + strand, within RR42_RS23600at 619.897 kb on - strand, within RR42_RS23600at 619.897 kb on - strand, within RR42_RS23600at 619.927 kb on - strand, within RR42_RS23600at 619.939 kb on + strand, within RR42_RS23600at 619.939 kb on + strand, within RR42_RS23600at 619.940 kb on - strand, within RR42_RS23600at 619.963 kb on - strand, within RR42_RS23600at 620.250 kb on + strand, within RR42_RS23600at 620.250 kb on + strand, within RR42_RS23600at 620.251 kb on - strand, within RR42_RS23600at 620.256 kb on + strand, within RR42_RS23600at 620.568 kb on + strand, within RR42_RS23600at 620.569 kb on - strand, within RR42_RS23600at 620.655 kb on + strand, within RR42_RS23600

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
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618,175 - RR42_RS23590 0.27 -0.8
618,175 - RR42_RS23590 0.27 +0.3
618,322 - RR42_RS23590 0.41 +0.1
618,591 + RR42_RS23590 0.66 +0.0
618,592 - RR42_RS23590 0.66 +0.9
618,592 - RR42_RS23590 0.66 -0.9
618,665 + RR42_RS23590 0.73 -1.3
618,665 + RR42_RS23590 0.73 -1.0
618,665 + RR42_RS23590 0.73 +0.1
618,665 + RR42_RS23590 0.73 -0.2
618,666 - RR42_RS23590 0.73 -0.7
618,666 - RR42_RS23590 0.73 -0.4
618,783 + RR42_RS23590 0.84 +0.2
618,783 + RR42_RS23590 0.84 +0.3
618,783 + RR42_RS23590 0.84 -0.1
618,784 - RR42_RS23590 0.84 -0.5
618,784 - RR42_RS23590 0.84 -0.3
619,120 + +0.7
619,291 + RR42_RS23595 0.28 -0.9
619,292 - RR42_RS23595 0.28 -2.0
619,292 - RR42_RS23595 0.28 -0.5
619,351 + RR42_RS23595 0.39 -1.3
619,402 + RR42_RS23595 0.48 +1.1
619,415 - RR42_RS23595 0.50 +0.1
619,798 - +0.0
619,896 + RR42_RS23600 0.17 +0.4
619,897 - RR42_RS23600 0.17 +0.0
619,897 - RR42_RS23600 0.17 +0.4
619,927 - RR42_RS23600 0.19 +0.3
619,939 + RR42_RS23600 0.20 -1.3
619,939 + RR42_RS23600 0.20 +3.2
619,940 - RR42_RS23600 0.20 +0.3
619,963 - RR42_RS23600 0.22 -0.1
620,250 + RR42_RS23600 0.44 -0.4
620,250 + RR42_RS23600 0.44 -0.4
620,251 - RR42_RS23600 0.44 +0.3
620,256 + RR42_RS23600 0.45 +0.2
620,568 + RR42_RS23600 0.69 +0.1
620,569 - RR42_RS23600 0.69 +0.5
620,655 + RR42_RS23600 0.76 +0.1

Or see this region's nucleotide sequence