Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23045 and RR42_RS23050 are separated by 60 nucleotides RR42_RS23050 and RR42_RS23055 are separated by 55 nucleotides
RR42_RS23045: RR42_RS23045 - LysR family transcriptional regulator, at 504,680 to 505,585
_RS23045
RR42_RS23050: RR42_RS23050 - 4-oxalomesaconate tautomerase, at 505,646 to 506,725
_RS23050
RR42_RS23055: RR42_RS23055 - ABC transporter substrate-binding protein, at 506,781 to 507,728
_RS23055
Position (kb) 505
506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 504.682 kb on - strand at 505.028 kb on + strand, within RR42_RS23045 at 505.028 kb on + strand, within RR42_RS23045 at 505.200 kb on - strand, within RR42_RS23045 at 505.222 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.261 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045 at 505.264 kb on - strand, within RR42_RS23045 at 505.613 kb on + strand at 505.613 kb on + strand at 505.614 kb on - strand at 505.614 kb on - strand at 505.628 kb on - strand at 505.669 kb on - strand at 505.749 kb on + strand at 505.749 kb on + strand at 505.750 kb on - strand at 505.866 kb on + strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.867 kb on - strand, within RR42_RS23050 at 505.908 kb on + strand, within RR42_RS23050 at 506.023 kb on + strand, within RR42_RS23050 at 506.075 kb on + strand, within RR42_RS23050 at 506.076 kb on - strand, within RR42_RS23050 at 506.086 kb on + strand, within RR42_RS23050 at 506.221 kb on + strand, within RR42_RS23050 at 506.513 kb on + strand, within RR42_RS23050 at 506.514 kb on - strand, within RR42_RS23050 at 506.760 kb on + strand at 506.761 kb on - strand at 506.766 kb on + strand at 506.789 kb on + strand at 506.790 kb on - strand at 506.994 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.023 kb on + strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.024 kb on - strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.084 kb on + strand, within RR42_RS23055 at 507.161 kb on - strand, within RR42_RS23055 at 507.223 kb on - strand, within RR42_RS23055 at 507.268 kb on + strand, within RR42_RS23055 at 507.309 kb on + strand, within RR42_RS23055 at 507.413 kb on - strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.627 kb on + strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055 at 507.628 kb on - strand, within RR42_RS23055
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 504,682 - -0.2 505,028 + RR42_RS23045 0.38 -0.5 505,028 + RR42_RS23045 0.38 -1.4 505,200 - RR42_RS23045 0.57 -0.6 505,222 - RR42_RS23045 0.60 +1.0 505,261 - RR42_RS23045 0.64 -0.0 505,261 - RR42_RS23045 0.64 +0.1 505,264 - RR42_RS23045 0.64 -1.1 505,264 - RR42_RS23045 0.64 +0.1 505,613 + +1.0 505,613 + +0.2 505,614 - -0.9 505,614 - -0.4 505,628 - +1.5 505,669 - +0.6 505,749 + -0.1 505,749 + +0.7 505,750 - +0.3 505,866 + RR42_RS23050 0.20 +0.3 505,867 - RR42_RS23050 0.20 +1.2 505,867 - RR42_RS23050 0.20 +0.1 505,867 - RR42_RS23050 0.20 +0.1 505,867 - RR42_RS23050 0.20 +0.5 505,867 - RR42_RS23050 0.20 +0.5 505,908 + RR42_RS23050 0.24 -0.2 506,023 + RR42_RS23050 0.35 -0.2 506,075 + RR42_RS23050 0.40 +0.6 506,076 - RR42_RS23050 0.40 +0.1 506,086 + RR42_RS23050 0.41 +2.0 506,221 + RR42_RS23050 0.53 -0.7 506,513 + RR42_RS23050 0.80 -0.4 506,514 - RR42_RS23050 0.80 -0.1 506,760 + +0.3 506,761 - +0.3 506,766 + -0.2 506,789 + +0.3 506,790 - +0.8 506,994 + RR42_RS23055 0.22 -0.4 507,023 + RR42_RS23055 0.26 -0.4 507,023 + RR42_RS23055 0.26 +0.3 507,024 - RR42_RS23055 0.26 +0.3 507,024 - RR42_RS23055 0.26 -0.0 507,084 + RR42_RS23055 0.32 +1.3 507,084 + RR42_RS23055 0.32 +0.2 507,161 - RR42_RS23055 0.40 +0.3 507,223 - RR42_RS23055 0.47 +0.2 507,268 + RR42_RS23055 0.51 +0.8 507,309 + RR42_RS23055 0.56 -0.5 507,413 - RR42_RS23055 0.67 -1.0 507,627 + RR42_RS23055 0.89 -1.5 507,627 + RR42_RS23055 0.89 -1.4 507,627 + RR42_RS23055 0.89 +0.1 507,628 - RR42_RS23055 0.89 -0.7 507,628 - RR42_RS23055 0.89 -2.4
Or see this region's nucleotide sequence