Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21495 and RR42_RS21500 are separated by 128 nucleotides RR42_RS21500 and RR42_RS21505 are separated by 63 nucleotides RR42_RS21505 and RR42_RS21510 are separated by 41 nucleotides RR42_RS21510 and RR42_RS21515 are separated by 123 nucleotides
RR42_RS21495: RR42_RS21495 - adenosine deaminase, at 151,249 to 152,676
_RS21495
RR42_RS21500: RR42_RS21500 - cysteine methyltransferase, at 152,805 to 153,338
_RS21500
RR42_RS21505: RR42_RS21505 - hypothetical protein, at 153,402 to 153,971
_RS21505
RR42_RS21510: RR42_RS21510 - lysine transporter LysE, at 154,013 to 154,651
_RS21510
RR42_RS21515: RR42_RS21515 - LysR family transcriptional regulator, at 154,775 to 155,713
_RS21515
Position (kb) 153
154 Strain fitness (log2 ratio) -2
-1
0
1 at 152.512 kb on + strand, within RR42_RS21495 at 152.513 kb on - strand, within RR42_RS21495 at 152.513 kb on - strand, within RR42_RS21495 at 152.513 kb on - strand, within RR42_RS21495 at 152.563 kb on + strand at 152.563 kb on + strand at 152.564 kb on - strand at 152.592 kb on + strand at 152.672 kb on - strand at 152.815 kb on - strand at 152.901 kb on + strand, within RR42_RS21500 at 152.901 kb on + strand, within RR42_RS21500 at 152.902 kb on - strand, within RR42_RS21500 at 153.102 kb on + strand, within RR42_RS21500 at 153.103 kb on - strand, within RR42_RS21500 at 153.103 kb on - strand, within RR42_RS21500 at 153.237 kb on + strand, within RR42_RS21500 at 153.431 kb on - strand at 153.739 kb on + strand, within RR42_RS21505 at 153.894 kb on + strand, within RR42_RS21505 at 153.931 kb on + strand at 153.931 kb on + strand at 153.931 kb on + strand at 153.931 kb on + strand at 153.932 kb on - strand at 153.945 kb on + strand at 154.059 kb on - strand at 154.231 kb on + strand, within RR42_RS21510 at 154.231 kb on + strand, within RR42_RS21510 at 154.232 kb on - strand, within RR42_RS21510 at 154.233 kb on + strand, within RR42_RS21510 at 154.234 kb on - strand, within RR42_RS21510 at 154.234 kb on - strand, within RR42_RS21510 at 154.500 kb on - strand, within RR42_RS21510 at 154.655 kb on + strand at 154.708 kb on + strand at 154.708 kb on + strand at 154.708 kb on + strand at 154.709 kb on - strand at 154.709 kb on - strand at 154.709 kb on - strand at 154.730 kb on - strand at 154.731 kb on + strand at 154.964 kb on - strand, within RR42_RS21515 at 154.964 kb on - strand, within RR42_RS21515
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml remove 152,512 + RR42_RS21495 0.88 +0.4 152,513 - RR42_RS21495 0.89 +0.4 152,513 - RR42_RS21495 0.89 +0.2 152,513 - RR42_RS21495 0.89 -0.9 152,563 + -1.2 152,563 + -0.9 152,564 - +0.4 152,592 + +1.3 152,672 - -0.5 152,815 - -0.5 152,901 + RR42_RS21500 0.18 -0.6 152,901 + RR42_RS21500 0.18 +0.5 152,902 - RR42_RS21500 0.18 +0.9 153,102 + RR42_RS21500 0.56 +0.5 153,103 - RR42_RS21500 0.56 -0.2 153,103 - RR42_RS21500 0.56 -0.2 153,237 + RR42_RS21500 0.81 -0.5 153,431 - +0.3 153,739 + RR42_RS21505 0.59 -1.6 153,894 + RR42_RS21505 0.86 -1.5 153,931 + +0.1 153,931 + -0.4 153,931 + +0.3 153,931 + +0.5 153,932 - -0.9 153,945 + +0.1 154,059 - -1.8 154,231 + RR42_RS21510 0.34 +0.0 154,231 + RR42_RS21510 0.34 +0.3 154,232 - RR42_RS21510 0.34 -0.6 154,233 + RR42_RS21510 0.34 -0.3 154,234 - RR42_RS21510 0.35 -0.1 154,234 - RR42_RS21510 0.35 -1.5 154,500 - RR42_RS21510 0.76 -0.1 154,655 + +0.5 154,708 + -0.1 154,708 + -0.4 154,708 + -1.1 154,709 - +0.2 154,709 - -0.6 154,709 - +0.2 154,730 - +0.4 154,731 + +0.5 154,964 - RR42_RS21515 0.20 +0.3 154,964 - RR42_RS21515 0.20 -0.5
Or see this region's nucleotide sequence