Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21380

Experiment: R2A with Sisomicin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21375 and RR42_RS21380 are separated by 40 nucleotidesRR42_RS21380 and RR42_RS21385 are separated by 18 nucleotides RR42_RS21375: RR42_RS21375 - succinate-semialdehyde dehydrogenase, at 125,317 to 126,783 _RS21375 RR42_RS21380: RR42_RS21380 - cupin, at 126,824 to 127,141 _RS21380 RR42_RS21385: RR42_RS21385 - acetylpolyamine aminohydrolase, at 127,160 to 128,233 _RS21385 Position (kb) 126 127 128Strain fitness (log2 ratio) -3 -2 -1 0 1at 126.212 kb on - strand, within RR42_RS21375at 126.229 kb on + strand, within RR42_RS21375at 126.229 kb on + strand, within RR42_RS21375at 126.740 kb on - strandat 126.755 kb on - strandat 126.781 kb on + strandat 126.799 kb on + strandat 126.938 kb on + strand, within RR42_RS21380at 126.938 kb on + strand, within RR42_RS21380at 127.451 kb on + strand, within RR42_RS21385at 127.454 kb on + strand, within RR42_RS21385at 127.454 kb on + strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.455 kb on - strand, within RR42_RS21385at 127.526 kb on + strand, within RR42_RS21385at 127.527 kb on - strand, within RR42_RS21385at 127.527 kb on - strand, within RR42_RS21385at 127.650 kb on - strand, within RR42_RS21385at 127.880 kb on + strand, within RR42_RS21385at 127.880 kb on + strand, within RR42_RS21385at 127.881 kb on - strand, within RR42_RS21385at 127.881 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 127.926 kb on - strand, within RR42_RS21385at 128.012 kb on + strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385at 128.055 kb on - strand, within RR42_RS21385

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
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126,212 - RR42_RS21375 0.61 +0.9
126,229 + RR42_RS21375 0.62 -1.1
126,229 + RR42_RS21375 0.62 -0.6
126,740 - -0.3
126,755 - -0.1
126,781 + +0.6
126,799 + -0.0
126,938 + RR42_RS21380 0.36 -3.1
126,938 + RR42_RS21380 0.36 -1.1
127,451 + RR42_RS21385 0.27 -0.6
127,454 + RR42_RS21385 0.27 -0.5
127,454 + RR42_RS21385 0.27 +0.2
127,455 - RR42_RS21385 0.27 -0.6
127,455 - RR42_RS21385 0.27 -1.0
127,455 - RR42_RS21385 0.27 -0.6
127,526 + RR42_RS21385 0.34 -0.5
127,527 - RR42_RS21385 0.34 +0.2
127,527 - RR42_RS21385 0.34 -0.2
127,650 - RR42_RS21385 0.46 +0.4
127,880 + RR42_RS21385 0.67 -0.1
127,880 + RR42_RS21385 0.67 -1.8
127,881 - RR42_RS21385 0.67 -1.2
127,881 - RR42_RS21385 0.67 +0.1
127,926 - RR42_RS21385 0.71 +0.1
127,926 - RR42_RS21385 0.71 +0.1
127,926 - RR42_RS21385 0.71 +0.1
128,012 + RR42_RS21385 0.79 -0.5
128,055 - RR42_RS21385 0.83 -1.0
128,055 - RR42_RS21385 0.83 -0.6
128,055 - RR42_RS21385 0.83 +0.6
128,055 - RR42_RS21385 0.83 +0.5
128,055 - RR42_RS21385 0.83 -1.4

Or see this region's nucleotide sequence