Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20330

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
4,397,845	+		RR42_RS20325	0.38	-0.1
4,397,846	-		RR42_RS20325	0.38	-0.6
4,397,846	-		RR42_RS20325	0.38	-0.6
4,397,846	-		RR42_RS20325	0.38	-1.2
4,397,879	+		RR42_RS20325	0.41	+0.6
4,397,879	+		RR42_RS20325	0.41	+0.4
4,397,932	+		RR42_RS20325	0.47	-0.5
4,398,018	+		RR42_RS20325	0.55	-0.7
4,398,018	+		RR42_RS20325	0.55	+0.4
4,398,019	-		RR42_RS20325	0.55	+1.7
4,398,097	+		RR42_RS20325	0.63	-0.3
4,398,098	-		RR42_RS20325	0.63	-0.2
4,398,098	-		RR42_RS20325	0.63	+0.7
4,398,100	+		RR42_RS20325	0.63	-0.3
4,398,100	+		RR42_RS20325	0.63	+0.1
4,398,110	+		RR42_RS20325	0.64	-0.2
4,398,111	-		RR42_RS20325	0.64	+3.0
4,398,161	-		RR42_RS20325	0.69	+0.3
4,398,270	+		RR42_RS20325	0.80	-0.1
4,398,289	+		RR42_RS20325	0.82	+0.0
4,398,289	+		RR42_RS20325	0.82	+0.8
4,398,290	-		RR42_RS20325	0.82	-0.9
4,398,290	-		RR42_RS20325	0.82	-0.2
4,398,290	-		RR42_RS20325	0.82	-0.2
4,398,332	+		RR42_RS20325	0.86	+0.4
4,398,386	-				+0.3
4,398,426	+				+0.2
4,398,426	+				+0.2
4,398,426	+				+2.0
4,398,426	+				-1.7
4,398,426	+				-1.0
4,398,427	-				+0.4
4,398,427	-				-0.4
4,398,533	-				+0.8
4,398,580	+				-0.2
4,398,581	-				-0.2
4,398,677	-				+1.0
4,398,677	-				+0.1
4,398,735	+		RR42_RS20330	0.18	-0.4
4,398,735	+		RR42_RS20330	0.18	-1.6
4,398,735	+		RR42_RS20330	0.18	+0.8
4,398,735	+		RR42_RS20330	0.18	-1.9
4,398,735	+		RR42_RS20330	0.18	-0.8
4,398,735	+		RR42_RS20330	0.18	+0.7
4,398,735	+		RR42_RS20330	0.18	-0.7
4,398,735	+		RR42_RS20330	0.18	-0.4
4,398,735	+		RR42_RS20330	0.18	-0.1
4,398,736	-		RR42_RS20330	0.19	+0.0
4,398,736	-		RR42_RS20330	0.19	-0.6
4,398,736	-		RR42_RS20330	0.19	-0.6
4,398,736	-		RR42_RS20330	0.19	+0.7
4,398,736	-		RR42_RS20330	0.19	+0.3
4,398,736	-		RR42_RS20330	0.19	-0.4
4,398,736	-		RR42_RS20330	0.19	+1.6
4,398,801	+		RR42_RS20330	0.30	+0.0
4,398,801	+		RR42_RS20330	0.30	-1.6
4,398,802	-		RR42_RS20330	0.30	-1.2
4,398,802	-		RR42_RS20330	0.30	-0.1
4,399,008	+		RR42_RS20330	0.65	-0.4
4,399,009	-		RR42_RS20330	0.65	+2.2
4,399,292	-				+0.5
4,399,292	-				-0.6
4,399,305	+				-0.1
4,399,305	+				-1.2
4,399,305	+				-0.2
4,399,306	-				-1.9
4,399,425	-				+0.2
4,399,425	-				+0.3
4,399,425	-				-0.2
4,399,494	+				+0.8
4,399,500	+				-1.9
4,399,500	+				+0.8
4,399,501	-				-0.3
4,399,501	-				-0.9
4,399,501	-				-0.4
4,399,501	-				-0.4
4,399,552	-				-0.5
4,399,552	-				+0.4
4,399,552	-				-0.2
4,399,672	+				-0.4
4,399,697	-				+0.6
4,399,793	-				+0.1
4,399,819	+				-1.8
4,399,819	+				-0.2
4,399,819	+				+0.8
4,399,820	-				-0.7
4,399,820	-				-0.6
4,399,820	-				-0.1
4,399,820	-				-0.0
4,399,919	+				+0.1
4,399,968	-				-0.1
4,400,142	+		RR42_RS20340	0.17	+0.1