Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17400

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
3,765,247	+		RR42_RS17395	0.15	-1.4
3,765,248	-		RR42_RS17395	0.15	-1.9
3,765,248	-		RR42_RS17395	0.15	-0.5
3,765,386	+		RR42_RS17395	0.28	-1.7
3,765,386	+		RR42_RS17395	0.28	-1.9
3,765,544	+		RR42_RS17395	0.43	-0.1
3,765,544	+		RR42_RS17395	0.43	-0.3
3,765,544	+		RR42_RS17395	0.43	+0.3
3,765,544	+		RR42_RS17395	0.43	-3.1
3,765,544	+		RR42_RS17395	0.43	-0.4
3,765,544	+		RR42_RS17395	0.43	-1.1
3,765,545	-		RR42_RS17395	0.43	-0.7
3,765,545	-		RR42_RS17395	0.43	-1.1
3,765,545	-		RR42_RS17395	0.43	-2.6
3,765,545	-		RR42_RS17395	0.43	-1.1
3,765,778	+		RR42_RS17395	0.66	-0.8
3,766,093	+				-0.7
3,766,093	+				-0.1
3,766,286	+				-1.2
3,766,286	+				-3.5
3,766,286	+				-3.0
3,766,286	+				-2.7
3,766,286	+				-1.7
3,766,287	-				-2.0
3,766,287	-				+1.0
3,766,826	+		RR42_RS17400	0.56	-0.1
3,767,111	+		RR42_RS17400	0.81	-1.2
3,767,111	+		RR42_RS17400	0.81	-0.7
3,767,112	-		RR42_RS17400	0.81	-0.6
3,767,112	-		RR42_RS17400	0.81	-0.7
3,767,112	-		RR42_RS17400	0.81	+1.3
3,767,113	+		RR42_RS17400	0.81	-1.5
3,767,113	+		RR42_RS17400	0.81	-0.5
3,767,114	-		RR42_RS17400	0.81	-1.1
3,767,114	-		RR42_RS17400	0.81	-1.3
3,767,138	+		RR42_RS17400	0.83	-1.7
3,767,208	-		RR42_RS17400	0.89	-0.6
3,767,210	+		RR42_RS17400	0.89	-0.5
3,767,409	+				+0.9
3,767,409	+				+3.0
3,767,409	+				-2.0
3,767,410	-				-0.2
3,767,412	+				-0.3
3,767,412	+				+1.8
3,767,412	+				-1.1
3,767,412	+				-0.9
3,767,413	-				+0.0
3,767,419	+				-0.3
3,767,419	+				-1.8
3,767,419	+				-0.2
3,767,420	-				-0.7
3,767,462	+				-0.9
3,767,462	+				-1.4
3,767,475	+				+0.5
3,767,475	+				-0.6
3,767,517	+				-2.4
3,767,583	+		RR42_RS17405	0.23	-3.0