Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15965

Experiment: R2A with Sisomicin 0.035 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS15955 and RR42_RS15960 are separated by 13 nucleotidesRR42_RS15960 and RR42_RS15965 are separated by 36 nucleotidesRR42_RS15965 and RR42_RS15970 are separated by 52 nucleotidesRR42_RS15970 and RR42_RS15975 overlap by 4 nucleotides RR42_RS15955: RR42_RS15955 - superoxide dismutase, at 3,452,359 to 3,452,898 _RS15955 RR42_RS15960: RR42_RS15960 - hypothetical protein, at 3,452,912 to 3,453,313 _RS15960 RR42_RS15965: RR42_RS15965 - formate dehydrogenase, at 3,453,350 to 3,454,561 _RS15965 RR42_RS15970: RR42_RS15970 - lipoprotein, at 3,454,614 to 3,454,847 _RS15970 RR42_RS15975: RR42_RS15975 - formate dehydrogenase, at 3,454,844 to 3,455,509 _RS15975 Position (kb) 3453 3454 3455Strain fitness (log2 ratio) -2 -1 0 1 2at 3452.423 kb on + strand, within RR42_RS15955at 3452.424 kb on - strand, within RR42_RS15955at 3452.704 kb on + strand, within RR42_RS15955at 3452.864 kb on - strandat 3452.882 kb on - strandat 3452.887 kb on + strandat 3452.887 kb on + strandat 3452.887 kb on + strandat 3452.888 kb on - strandat 3452.937 kb on - strandat 3453.129 kb on + strand, within RR42_RS15960at 3453.129 kb on + strand, within RR42_RS15960at 3453.129 kb on + strand, within RR42_RS15960at 3453.132 kb on + strand, within RR42_RS15960at 3453.439 kb on + strandat 3453.447 kb on + strandat 3453.532 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.540 kb on + strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.541 kb on - strand, within RR42_RS15965at 3453.544 kb on + strand, within RR42_RS15965at 3453.544 kb on + strand, within RR42_RS15965at 3453.544 kb on + strand, within RR42_RS15965at 3453.544 kb on + strand, within RR42_RS15965at 3453.545 kb on - strand, within RR42_RS15965at 3453.853 kb on + strand, within RR42_RS15965at 3453.853 kb on + strand, within RR42_RS15965at 3453.853 kb on + strand, within RR42_RS15965at 3453.853 kb on + strand, within RR42_RS15965at 3453.854 kb on - strand, within RR42_RS15965at 3453.874 kb on + strand, within RR42_RS15965at 3453.874 kb on + strand, within RR42_RS15965at 3453.874 kb on + strand, within RR42_RS15965at 3453.875 kb on - strand, within RR42_RS15965at 3453.875 kb on - strand, within RR42_RS15965at 3453.875 kb on - strand, within RR42_RS15965at 3453.875 kb on - strand, within RR42_RS15965at 3453.894 kb on + strand, within RR42_RS15965at 3453.894 kb on + strand, within RR42_RS15965at 3454.230 kb on + strand, within RR42_RS15965at 3454.328 kb on - strand, within RR42_RS15965at 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.561 kb on + strandat 3454.562 kb on - strandat 3454.562 kb on - strandat 3454.630 kb on + strandat 3454.631 kb on - strandat 3454.643 kb on - strand, within RR42_RS15970at 3454.736 kb on - strand, within RR42_RS15970at 3454.994 kb on + strand, within RR42_RS15975at 3454.994 kb on + strand, within RR42_RS15975at 3454.994 kb on + strand, within RR42_RS15975at 3454.995 kb on - strand, within RR42_RS15975at 3454.995 kb on - strand, within RR42_RS15975at 3454.995 kb on - strand, within RR42_RS15975at 3455.095 kb on - strand, within RR42_RS15975at 3455.095 kb on - strand, within RR42_RS15975at 3455.095 kb on - strand, within RR42_RS15975at 3455.224 kb on - strand, within RR42_RS15975at 3455.224 kb on - strand, within RR42_RS15975at 3455.232 kb on + strand, within RR42_RS15975at 3455.279 kb on + strand, within RR42_RS15975at 3455.285 kb on - strand, within RR42_RS15975at 3455.289 kb on + strand, within RR42_RS15975at 3455.289 kb on + strand, within RR42_RS15975at 3455.290 kb on - strand, within RR42_RS15975at 3455.290 kb on - strand, within RR42_RS15975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Sisomicin 0.035 mg/ml
remove
3,452,423 + RR42_RS15955 0.12 -0.1
3,452,424 - RR42_RS15955 0.12 +0.3
3,452,704 + RR42_RS15955 0.64 -0.5
3,452,864 - +1.1
3,452,882 - -0.3
3,452,887 + +0.7
3,452,887 + -0.2
3,452,887 + +0.3
3,452,888 - -0.6
3,452,937 - -0.4
3,453,129 + RR42_RS15960 0.54 +0.1
3,453,129 + RR42_RS15960 0.54 +0.9
3,453,129 + RR42_RS15960 0.54 +0.1
3,453,132 + RR42_RS15960 0.55 +0.0
3,453,439 + +0.2
3,453,447 + +1.2
3,453,532 + RR42_RS15965 0.15 -0.5
3,453,540 + RR42_RS15965 0.16 +0.1
3,453,540 + RR42_RS15965 0.16 -0.6
3,453,540 + RR42_RS15965 0.16 +1.2
3,453,540 + RR42_RS15965 0.16 +1.2
3,453,540 + RR42_RS15965 0.16 +0.6
3,453,540 + RR42_RS15965 0.16 -0.2
3,453,540 + RR42_RS15965 0.16 -0.9
3,453,540 + RR42_RS15965 0.16 -0.2
3,453,540 + RR42_RS15965 0.16 +0.3
3,453,540 + RR42_RS15965 0.16 +0.6
3,453,540 + RR42_RS15965 0.16 +1.0
3,453,540 + RR42_RS15965 0.16 +0.1
3,453,541 - RR42_RS15965 0.16 +0.5
3,453,541 - RR42_RS15965 0.16 +1.3
3,453,541 - RR42_RS15965 0.16 -0.0
3,453,541 - RR42_RS15965 0.16 -0.6
3,453,541 - RR42_RS15965 0.16 +2.0
3,453,541 - RR42_RS15965 0.16 -0.7
3,453,544 + RR42_RS15965 0.16 +0.4
3,453,544 + RR42_RS15965 0.16 +1.0
3,453,544 + RR42_RS15965 0.16 +0.3
3,453,544 + RR42_RS15965 0.16 +1.8
3,453,545 - RR42_RS15965 0.16 +0.1
3,453,853 + RR42_RS15965 0.42 +0.2
3,453,853 + RR42_RS15965 0.42 +0.2
3,453,853 + RR42_RS15965 0.42 +0.6
3,453,853 + RR42_RS15965 0.42 -0.9
3,453,854 - RR42_RS15965 0.42 +0.3
3,453,874 + RR42_RS15965 0.43 -1.0
3,453,874 + RR42_RS15965 0.43 +0.8
3,453,874 + RR42_RS15965 0.43 -0.1
3,453,875 - RR42_RS15965 0.43 +0.0
3,453,875 - RR42_RS15965 0.43 +1.2
3,453,875 - RR42_RS15965 0.43 -2.1
3,453,875 - RR42_RS15965 0.43 +0.5
3,453,894 + RR42_RS15965 0.45 +0.3
3,453,894 + RR42_RS15965 0.45 -0.1
3,454,230 + RR42_RS15965 0.73 +0.7
3,454,328 - RR42_RS15965 0.81 +0.4
3,454,561 + +0.4
3,454,561 + +0.2
3,454,561 + +0.3
3,454,561 + -0.2
3,454,561 + +0.1
3,454,561 + +0.2
3,454,561 + -0.7
3,454,561 + +0.3
3,454,561 + +0.4
3,454,562 - +0.0
3,454,562 - +0.3
3,454,630 + +0.2
3,454,631 - -0.3
3,454,643 - RR42_RS15970 0.12 -1.1
3,454,736 - RR42_RS15970 0.52 -0.6
3,454,994 + RR42_RS15975 0.23 +0.4
3,454,994 + RR42_RS15975 0.23 -0.1
3,454,994 + RR42_RS15975 0.23 -2.1
3,454,995 - RR42_RS15975 0.23 -1.3
3,454,995 - RR42_RS15975 0.23 +0.1
3,454,995 - RR42_RS15975 0.23 -0.3
3,455,095 - RR42_RS15975 0.38 +0.8
3,455,095 - RR42_RS15975 0.38 -0.4
3,455,095 - RR42_RS15975 0.38 +0.5
3,455,224 - RR42_RS15975 0.57 -0.8
3,455,224 - RR42_RS15975 0.57 -0.8
3,455,232 + RR42_RS15975 0.58 +0.2
3,455,279 + RR42_RS15975 0.65 -0.6
3,455,285 - RR42_RS15975 0.66 -0.7
3,455,289 + RR42_RS15975 0.67 -1.7
3,455,289 + RR42_RS15975 0.67 -0.3
3,455,290 - RR42_RS15975 0.67 -0.4
3,455,290 - RR42_RS15975 0.67 -0.4

Or see this region's nucleotide sequence