Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS15755
Experiment: R2A with Sisomicin 0.035 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Sisomicin 0.035 mg/ml |
---|---|---|---|---|---|
remove | |||||
3,404,520 | + | RR42_RS15750 | 0.21 | -0.4 | |
3,404,529 | + | RR42_RS15750 | 0.22 | -0.2 | |
3,404,529 | + | RR42_RS15750 | 0.22 | -0.8 | |
3,404,566 | + | RR42_RS15750 | 0.25 | +0.2 | |
3,404,566 | + | RR42_RS15750 | 0.25 | -0.8 | |
3,404,816 | + | RR42_RS15750 | 0.46 | -1.3 | |
3,404,946 | + | RR42_RS15750 | 0.57 | -1.4 | |
3,405,076 | + | RR42_RS15750 | 0.67 | +0.7 | |
3,405,356 | + | -1.5 | |||
3,405,356 | + | +0.9 | |||
3,405,356 | + | +2.1 | |||
3,405,384 | + | -0.6 | |||
3,405,384 | + | -0.2 | |||
3,405,387 | + | -1.3 | |||
3,405,387 | + | -1.1 | |||
3,405,393 | + | -0.2 | |||
3,405,393 | + | -2.0 | |||
3,405,393 | + | -1.3 | |||
3,405,396 | + | +0.0 | |||
3,405,687 | - | RR42_RS15755 | 0.40 | -0.1 | |
3,405,687 | - | RR42_RS15755 | 0.40 | -0.5 | |
3,405,735 | + | RR42_RS15755 | 0.48 | -2.5 | |
3,405,794 | - | RR42_RS15755 | 0.59 | -0.7 | |
3,406,078 | + | -0.3 | |||
3,406,078 | + | -1.6 |
Or see this region's nucleotide sequence