Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12970

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,790,194	-		RR42_RS12965	0.14	-0.1
2,790,202	+		RR42_RS12965	0.15	-0.6
2,790,202	+		RR42_RS12965	0.15	+0.3
2,790,202	+		RR42_RS12965	0.15	-0.5
2,790,212	+		RR42_RS12965	0.16	-0.5
2,790,212	+		RR42_RS12965	0.16	+0.0
2,790,212	+		RR42_RS12965	0.16	-0.1
2,790,212	+		RR42_RS12965	0.16	-1.3
2,790,212	+		RR42_RS12965	0.16	+0.7
2,790,213	-		RR42_RS12965	0.16	-0.5
2,790,280	+		RR42_RS12965	0.24	+0.1
2,790,280	+		RR42_RS12965	0.24	-0.1
2,790,281	-		RR42_RS12965	0.24	-1.3
2,790,281	-		RR42_RS12965	0.24	-0.2
2,790,281	-		RR42_RS12965	0.24	+0.3
2,790,333	+		RR42_RS12965	0.30	-0.4
2,790,398	+		RR42_RS12965	0.37	+0.2
2,790,399	-		RR42_RS12965	0.37	+0.2
2,790,439	+		RR42_RS12965	0.42	+0.7
2,790,440	-		RR42_RS12965	0.42	-1.4
2,790,538	+		RR42_RS12965	0.53	+1.2
2,790,611	-		RR42_RS12965	0.61	-0.1
2,790,670	+		RR42_RS12965	0.68	-0.0
2,790,670	+		RR42_RS12965	0.68	+0.7
2,790,751	+		RR42_RS12965	0.77	+0.4
2,790,842	-		RR42_RS12965	0.88	+0.4
2,790,842	-		RR42_RS12965	0.88	-0.1
2,790,910	+				-1.6
2,790,911	-				+0.1
2,790,993	+				+1.0
2,790,993	+				+0.9
2,790,993	+				-1.3
2,790,994	-				-0.9
2,790,994	-				-0.6
2,790,997	+				+0.0
2,790,997	+				+1.0
2,790,998	-				-0.0
2,790,998	-				+0.3
2,791,077	-				-1.5
2,791,149	+				+0.6
2,791,149	+				-0.5
2,791,150	-				+1.1
2,791,150	-				-0.4
2,791,150	-				-0.1
2,791,200	+				+1.2
2,791,302	-		RR42_RS12970	0.17	+1.6
2,791,302	-		RR42_RS12970	0.17	+0.2
2,791,328	+		RR42_RS12970	0.19	+0.1
2,791,328	+		RR42_RS12970	0.19	-0.2
2,791,400	+				+1.3
2,791,400	+		RR42_RS12970	0.25	+3.1
2,791,400	+		RR42_RS12970	0.25	+1.1
2,791,427	+		RR42_RS12970	0.27	+1.8
2,791,427	+		RR42_RS12970	0.27	+1.4
2,791,428	-		RR42_RS12970	0.27	+0.2
2,791,428	-		RR42_RS12970	0.27	-0.1
2,791,514	+		RR42_RS12970	0.33	+1.6
2,791,515	-		RR42_RS12970	0.33	-2.7
2,791,612	-		RR42_RS12970	0.41	+0.1
2,791,612	-		RR42_RS12970	0.41	+0.1
2,791,647	-		RR42_RS12970	0.43	+1.7
2,791,655	+		RR42_RS12970	0.44	-0.4
2,791,689	+		RR42_RS12970	0.47	+0.2
2,791,689	+		RR42_RS12970	0.47	+2.7
2,791,689	+		RR42_RS12970	0.47	-0.5
2,791,689	+		RR42_RS12970	0.47	+2.3
2,791,827	-		RR42_RS12970	0.57	+0.1
2,791,940	+		RR42_RS12970	0.66	-0.5
2,791,940	+		RR42_RS12970	0.66	-0.5
2,791,940	+		RR42_RS12970	0.66	-1.6
2,791,940	+		RR42_RS12970	0.66	+1.3
2,791,941	-		RR42_RS12970	0.66	+2.1
2,791,943	+		RR42_RS12970	0.66	-1.2
2,791,943	+		RR42_RS12970	0.66	-0.7
2,791,943	+		RR42_RS12970	0.66	+0.5
2,791,943	+		RR42_RS12970	0.66	+0.7
2,791,944	-		RR42_RS12970	0.66	-0.2
2,791,944	-		RR42_RS12970	0.66	+0.2
2,791,962	+		RR42_RS12970	0.67	-1.3
2,791,962	+		RR42_RS12970	0.67	-0.4
2,791,962	+		RR42_RS12970	0.67	+1.5
2,791,962	+		RR42_RS12970	0.67	+0.9
2,791,962	+		RR42_RS12970	0.67	+1.1
2,791,962	+		RR42_RS12970	0.67	+0.1
2,791,963	-		RR42_RS12970	0.67	-0.7
2,791,963	-		RR42_RS12970	0.67	+0.2
2,791,963	-		RR42_RS12970	0.67	-0.8
2,792,003	+		RR42_RS12970	0.70	+1.0
2,792,003	+		RR42_RS12970	0.70	+0.5
2,792,003	+		RR42_RS12970	0.70	-0.5
2,792,004	-		RR42_RS12970	0.71	+1.2
2,792,004	-		RR42_RS12970	0.71	+0.1
2,792,006	+		RR42_RS12970	0.71	-0.5
2,792,006	+		RR42_RS12970	0.71	+0.8
2,792,007	-		RR42_RS12970	0.71	-0.3
2,792,027	+		RR42_RS12970	0.72	-0.1
2,792,028	-		RR42_RS12970	0.72	-0.2
2,792,028	-		RR42_RS12970	0.72	+0.8
2,792,028	-		RR42_RS12970	0.72	+2.3
2,792,028	-		RR42_RS12970	0.72	+0.4
2,792,028	-		RR42_RS12970	0.72	-0.4
2,792,109	+		RR42_RS12970	0.79	-0.4
2,792,128	+		RR42_RS12970	0.80	-0.6
2,792,129	-		RR42_RS12970	0.80	+0.1
2,792,208	-		RR42_RS12970	0.86	+0.9
2,792,208	-		RR42_RS12970	0.86	-0.4
2,792,208	-		RR42_RS12970	0.86	+1.3
2,792,208	-		RR42_RS12970	0.86	+0.3
2,792,208	-		RR42_RS12970	0.86	+1.5
2,792,226	-		RR42_RS12970	0.87	-0.9
2,792,226	-		RR42_RS12970	0.87	-1.2
2,792,384	-				-0.6
2,792,409	+				+1.8
2,792,409	+				-0.9
2,792,409	+				+0.7
2,792,409	+				-1.1
2,792,410	-				+0.2
2,792,410	-				+0.7
2,792,410	-				+0.8
2,792,443	+				+0.8
2,792,444	-				-1.2
2,792,471	-				-0.1
2,792,471	-				+0.3
2,792,509	+				-1.1
2,792,510	-				-1.1
2,792,522	+				-2.1
2,792,522	+				-1.2
2,792,554	+				+0.4
2,792,554	+				+0.2
2,792,555	-				-2.2
2,792,555	-				-2.2
2,792,620	+				-0.1
2,792,621	-				-3.0
2,792,676	+		RR42_RS12975	0.14	-0.1
2,792,676	+		RR42_RS12975	0.14	-0.1
2,792,676	+		RR42_RS12975	0.14	+1.1
2,792,676	+		RR42_RS12975	0.14	+0.1
2,792,677	-		RR42_RS12975	0.14	-4.1
2,792,677	-		RR42_RS12975	0.14	+0.1
2,792,677	-		RR42_RS12975	0.14	-0.2
2,792,767	+		RR42_RS12975	0.25	+0.3
2,792,809	-		RR42_RS12975	0.30	-1.8
2,793,288	+				+0.1
2,793,288	+				-0.0
2,793,288	+				-1.1
2,793,289	-				+2.1
2,793,290	+				-0.2
2,793,291	-				-1.9
2,793,291	-				-1.1