Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10115

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
2,163,426	+				+0.6
2,163,659	+		RR42_RS10110	0.23	+0.2
2,163,662	+		RR42_RS10110	0.24	-1.1
2,163,663	-		RR42_RS10110	0.24	-0.7
2,163,976	-		RR42_RS10110	0.60	-2.2
2,163,976	-		RR42_RS10110	0.60	+0.1
2,164,047	-		RR42_RS10110	0.68	-2.1
2,164,047	-		RR42_RS10110	0.68	-0.5
2,164,047	-		RR42_RS10110	0.68	+1.3
2,164,112	+		RR42_RS10110	0.76	+0.5
2,164,164	-		RR42_RS10110	0.82	-0.8
2,164,320	+				-0.9
2,164,320	+				-0.0
2,164,321	-				+0.6
2,164,321	-				+0.1
2,164,321	-				-0.4
2,164,321	-				-0.3
2,164,411	+				-1.8
2,164,411	+				-0.7
2,164,411	+				-0.5
2,164,412	-				+0.6
2,164,412	-				-0.0
2,164,444	+				-0.4
2,164,445	-				-0.1
2,164,450	-				-0.8
2,164,592	+		RR42_RS10115	0.19	-0.3
2,164,593	-		RR42_RS10115	0.19	+0.1
2,164,601	+		RR42_RS10115	0.19	+0.9
2,164,601	+		RR42_RS10115	0.19	-1.7
2,164,602	-		RR42_RS10115	0.20	-1.9
2,164,602	-		RR42_RS10115	0.20	+0.3
2,164,602	-		RR42_RS10115	0.20	+0.6
2,164,602	-		RR42_RS10115	0.20	-1.1
2,164,677	+		RR42_RS10115	0.27	-2.2
2,164,678	-		RR42_RS10115	0.27	-0.6
2,164,781	+		RR42_RS10115	0.37	-0.7
2,164,789	+		RR42_RS10115	0.38	-0.6
2,164,795	-		RR42_RS10115	0.39	-1.3
2,164,835	+		RR42_RS10115	0.43	-2.1
2,164,835	+		RR42_RS10115	0.43	+0.3
2,164,917	+		RR42_RS10115	0.51	-1.2
2,164,917	+		RR42_RS10115	0.51	+0.6
2,164,918	-		RR42_RS10115	0.51	-0.3
2,164,918	-		RR42_RS10115	0.51	-0.5
2,165,018	-		RR42_RS10115	0.61	+0.5
2,165,018	-		RR42_RS10115	0.61	+0.1
2,165,075	-		RR42_RS10115	0.66	+0.4
2,165,075	-		RR42_RS10115	0.66	+0.2
2,165,075	-		RR42_RS10115	0.66	+0.3
2,165,382	+				+0.0
2,165,383	-				-0.1
2,165,383	-				-0.1
2,165,448	+				+1.1
2,165,576	+		RR42_RS10120	0.14	+0.7
2,165,577	-		RR42_RS10120	0.14	-0.8
2,165,577	-		RR42_RS10120	0.14	-0.7
2,165,577	-		RR42_RS10120	0.14	+1.2
2,165,597	-		RR42_RS10120	0.15	-0.6
2,165,611	-		RR42_RS10120	0.17	+0.1
2,165,667	+		RR42_RS10120	0.21	-0.2
2,165,667	+		RR42_RS10120	0.21	-1.4
2,165,754	+		RR42_RS10120	0.29	-0.7
2,165,755	-		RR42_RS10120	0.29	-0.2
2,165,755	-		RR42_RS10120	0.29	-0.2
2,165,755	-		RR42_RS10120	0.29	+0.1
2,165,762	+		RR42_RS10120	0.29	+0.8
2,165,831	+		RR42_RS10120	0.35	+0.4
2,165,885	+		RR42_RS10120	0.40	+0.1
2,165,886	-		RR42_RS10120	0.40	+0.6
2,165,886	-		RR42_RS10120	0.40	+0.2
2,166,064	+		RR42_RS10120	0.54	-0.7
2,166,064	+		RR42_RS10120	0.54	+0.7
2,166,064	+		RR42_RS10120	0.54	-0.9
2,166,172	+		RR42_RS10120	0.63	+0.0
2,166,173	-		RR42_RS10120	0.64	+1.2
2,166,173	-		RR42_RS10120	0.64	+0.6
2,166,314	+		RR42_RS10120	0.75	+0.1