Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08290

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,755,779	+				+1.0
1,755,780	-				-0.3
1,755,821	+				+0.0
1,755,843	-				-1.0
1,755,843	-				+1.7
1,755,890	+		RR42_RS08285	0.11	-1.4
1,755,988	+		RR42_RS08285	0.31	+1.4
1,755,988	+		RR42_RS08285	0.31	+0.4
1,755,988	+		RR42_RS08285	0.31	-1.3
1,755,988	+		RR42_RS08285	0.31	-1.0
1,755,988	+		RR42_RS08285	0.31	-0.1
1,755,989	-		RR42_RS08285	0.31	-0.7
1,756,094	+		RR42_RS08285	0.52	+0.6
1,756,095	-		RR42_RS08285	0.52	-0.4
1,756,259	+		RR42_RS08285	0.85	-0.3
1,756,260	-		RR42_RS08285	0.86	-1.4
1,756,260	-		RR42_RS08285	0.86	-0.6
1,756,484	+				-0.9
1,756,636	+				-0.3
1,756,637	-				+2.0
1,756,637	-				-0.3
1,756,712	+				+0.6
1,756,986	-		RR42_RS08290	0.20	+1.0
1,756,986	-		RR42_RS08290	0.20	+1.1
1,756,986	-		RR42_RS08290	0.20	+0.1
1,757,165	+		RR42_RS08290	0.37	+0.3
1,757,165	+		RR42_RS08290	0.37	-0.5
1,757,166	-		RR42_RS08290	0.37	-2.6
1,757,166	-		RR42_RS08290	0.37	+1.3
1,757,209	+		RR42_RS08290	0.41	-0.8
1,757,427	-		RR42_RS08290	0.62	+0.6
1,757,462	+		RR42_RS08290	0.66	+1.8
1,757,462	+		RR42_RS08290	0.66	+0.6
1,757,463	-		RR42_RS08290	0.66	-0.7
1,757,463	-		RR42_RS08290	0.66	-0.2
1,757,537	+		RR42_RS08290	0.73	+1.0
1,757,537	+		RR42_RS08290	0.73	+1.7
1,757,630	+		RR42_RS08290	0.82	+2.2
1,757,631	-		RR42_RS08290	0.82	+0.3
1,757,869	+				+0.6
1,757,870	-				+0.6
1,757,881	-				+0.2
1,757,895	+				+1.1
1,757,895	+				+0.2
1,758,109	+		RR42_RS08295	0.52	-2.0
1,758,110	-		RR42_RS08295	0.52	+0.2
1,758,133	+		RR42_RS08295	0.57	+0.1
1,758,134	-		RR42_RS08295	0.57	-0.2
1,758,174	+		RR42_RS08295	0.66	-0.2
1,758,174	+		RR42_RS08295	0.66	+1.0
1,758,507	-		RR42_RS08300	0.49	+0.3
1,758,594	+		RR42_RS08300	0.72	-0.6
1,758,594	+		RR42_RS08300	0.72	+0.0
1,758,594	+		RR42_RS08300	0.72	-0.3
1,758,598	+		RR42_RS08300	0.73	+0.2
1,758,598	+		RR42_RS08300	0.73	-0.2
1,758,727	-				-0.5
1,758,817	+				+1.0