Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06995

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,502,622	+		RR42_RS06985	0.12	-0.3
1,502,735	+		RR42_RS06985	0.28	-0.2
1,502,736	-		RR42_RS06985	0.28	-0.4
1,502,736	-		RR42_RS06985	0.28	+0.1
1,502,736	-		RR42_RS06985	0.28	+0.1
1,502,736	-		RR42_RS06985	0.28	+0.3
1,502,740	+		RR42_RS06985	0.29	-0.6
1,502,837	+		RR42_RS06985	0.43	-1.1
1,502,837	+		RR42_RS06985	0.43	+0.5
1,502,837	+		RR42_RS06985	0.43	+0.0
1,502,838	-		RR42_RS06985	0.43	-1.7
1,502,870	+		RR42_RS06985	0.47	-0.3
1,502,963	+		RR42_RS06985	0.61	+0.8
1,502,964	-		RR42_RS06985	0.61	+0.1
1,502,964	-		RR42_RS06985	0.61	-0.4
1,502,964	-		RR42_RS06985	0.61	+0.7
1,502,964	-		RR42_RS06985	0.61	+0.2
1,502,964	-		RR42_RS06985	0.61	-0.1
1,502,964	-		RR42_RS06985	0.61	-2.2
1,502,966	+		RR42_RS06985	0.61	+0.6
1,502,967	-		RR42_RS06985	0.61	+0.2
1,502,975	+		RR42_RS06985	0.62	-0.4
1,502,975	+		RR42_RS06985	0.62	+0.3
1,502,976	-		RR42_RS06985	0.63	+0.1
1,502,976	-		RR42_RS06985	0.63	+0.1
1,502,976	-		RR42_RS06985	0.63	-0.8
1,502,976	-		RR42_RS06985	0.63	-0.1
1,502,984	+		RR42_RS06985	0.64	-1.9
1,503,012	-		RR42_RS06985	0.68	-0.2
1,503,098	+		RR42_RS06985	0.80	+0.2
1,503,124	+		RR42_RS06985	0.84	-0.9
1,503,150	+		RR42_RS06985	0.87	+0.0
1,503,188	+				+0.2
1,503,191	+				-0.3
1,503,191	+				-0.8
1,503,191	+				+0.3
1,503,191	+				-0.3
1,503,192	-				-2.8
1,503,192	-				+0.3
1,503,192	-				+1.0
1,503,197	+				-0.3
1,503,197	+				+0.1
1,503,198	-				-0.1
1,503,250	+				-0.1
1,503,251	-				+2.0
1,503,305	+				-0.9
1,503,364	+		RR42_RS06990	0.21	-0.9
1,503,364	+		RR42_RS06990	0.21	+0.3
1,503,364	+		RR42_RS06990	0.21	+0.4
1,503,365	-		RR42_RS06990	0.21	-0.9
1,503,365	-		RR42_RS06990	0.21	+2.9
1,503,440	+		RR42_RS06990	0.50	-0.3
1,503,537	-		RR42_RS06990	0.87	+0.2
1,503,546	-				-0.1
1,503,551	+				+0.3
1,503,551	+				-0.2
1,503,551	+				-0.7
1,503,552	-				-0.9
1,503,552	-				-0.2
1,503,552	-				-0.2
1,503,585	+				-0.2
1,503,647	+				+1.6
1,503,648	-				+1.9
1,503,665	+		RR42_RS06995	0.11	+0.3
1,503,666	-		RR42_RS06995	0.11	+0.0
1,503,666	-		RR42_RS06995	0.11	-0.3
1,503,678	-		RR42_RS06995	0.13	+1.7
1,503,681	-		RR42_RS06995	0.14	+0.7
1,503,718	+		RR42_RS06995	0.19	+0.5
1,503,718	+		RR42_RS06995	0.19	+0.2
1,503,719	-		RR42_RS06995	0.19	-0.0
1,503,750	+		RR42_RS06995	0.23	+0.5
1,503,751	-		RR42_RS06995	0.23	-0.3
1,503,796	-		RR42_RS06995	0.30	-0.3
1,503,818	+		RR42_RS06995	0.33	+0.6
1,503,875	+		RR42_RS06995	0.41	+0.4
1,503,875	+		RR42_RS06995	0.41	-0.8
1,503,876	-		RR42_RS06995	0.41	+0.6
1,503,943	+		RR42_RS06995	0.50	+0.6
1,503,944	-		RR42_RS06995	0.50	-0.3
1,503,999	-		RR42_RS06995	0.58	-0.0
1,504,025	+		RR42_RS06995	0.62	+0.1
1,504,025	+		RR42_RS06995	0.62	-0.9
1,504,025	+		RR42_RS06995	0.62	+0.7
1,504,026	-		RR42_RS06995	0.62	-0.7
1,504,026	-		RR42_RS06995	0.62	+0.3
1,504,096	+		RR42_RS06995	0.71	-0.2
1,504,097	-		RR42_RS06995	0.72	+0.6
1,504,097	-		RR42_RS06995	0.72	+0.3
1,504,097	-		RR42_RS06995	0.72	+1.5
1,504,097	-		RR42_RS06995	0.72	+1.8
1,504,126	+		RR42_RS06995	0.76	+1.7
1,504,128	+		RR42_RS06995	0.76	+0.1
1,504,128	+		RR42_RS06995	0.76	+0.4
1,504,128	+		RR42_RS06995	0.76	+0.5
1,504,129	-		RR42_RS06995	0.76	+1.7
1,504,134	+		RR42_RS06995	0.77	-0.7
1,504,148	+		RR42_RS06995	0.79	-0.9
1,504,148	+		RR42_RS06995	0.79	+1.4
1,504,148	+		RR42_RS06995	0.79	-0.5
1,504,149	-		RR42_RS06995	0.79	+0.1
1,504,245	-				+0.2
1,504,278	-				+0.7
1,504,278	-				+0.2
1,504,307	+				+0.8
1,504,307	+				+0.1
1,504,308	-				-0.7
1,504,308	-				+0.6
1,504,310	+				+0.4
1,504,311	-				-1.5
1,504,317	+				+1.5
1,504,317	+				-0.1
1,504,443	-				-0.2
1,504,443	-				-0.3
1,504,475	+				+0.6
1,504,476	-				+0.7
1,504,476	-				+0.1
1,504,478	-				+0.6
1,504,490	+				+1.1
1,504,551	+				+0.2
1,504,552	-				-0.7
1,504,552	-				-2.2
1,504,552	-				+0.5
1,504,592	+				+0.2
1,504,592	+				-0.2
1,504,592	+				+0.8
1,504,593	-				-0.1
1,504,593	-				+0.7
1,504,664	+		RR42_RS07000	0.42	-0.2
1,504,681	+		RR42_RS07000	0.50	-0.1
1,504,681	+		RR42_RS07000	0.50	-0.7
1,504,681	+		RR42_RS07000	0.50	-1.7
1,504,681	+		RR42_RS07000	0.50	-0.3
1,504,682	-		RR42_RS07000	0.51	+1.1
1,504,682	-		RR42_RS07000	0.51	-0.3
1,504,682	-		RR42_RS07000	0.51	-0.0
1,504,771	+				-1.1
1,504,771	+				-0.3
1,504,771	+				+1.3
1,504,771	+				-0.7
1,504,772	-				-0.4
1,504,772	-				-2.4
1,504,772	-				-0.7
1,504,782	-				-1.2
1,504,820	+				+0.7
1,504,820	+				+0.9
1,504,820	+				-0.5
1,504,821	-				+0.7
1,504,940	-				-0.3
1,505,074	+				-1.5
1,505,074	+				+0.4
1,505,074	+				-0.2
1,505,074	+				+0.3
1,505,075	-				-0.4
1,505,138	-				+0.4
1,505,208	+		RR42_RS07005	0.20	+0.0
1,505,208	+		RR42_RS07005	0.20	+0.1
1,505,209	-		RR42_RS07005	0.21	+0.3
1,505,209	-		RR42_RS07005	0.21	-0.6
1,505,209	-		RR42_RS07005	0.21	+1.1
1,505,209	-		RR42_RS07005	0.21	+0.1