Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06535

Experiment: R2A with Sisomicin 0.035 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Sisomicin 0.035 mg/ml
1,429,538	+		RR42_RS06530	0.38	-0.2
1,429,538	+		RR42_RS06530	0.38	-0.1
1,429,538	+		RR42_RS06530	0.38	+0.7
1,429,539	-		RR42_RS06530	0.38	-0.1
1,429,539	-		RR42_RS06530	0.38	-1.7
1,429,539	-		RR42_RS06530	0.38	-1.1
1,429,539	-		RR42_RS06530	0.38	+0.2
1,429,540	+		RR42_RS06530	0.38	-0.2
1,429,540	+		RR42_RS06530	0.38	+0.1
1,429,540	+		RR42_RS06530	0.38	+0.1
1,429,657	+		RR42_RS06530	0.47	-0.1
1,429,658	-		RR42_RS06530	0.47	-0.4
1,429,658	-		RR42_RS06530	0.47	-0.6
1,429,658	-		RR42_RS06530	0.47	-0.5
1,429,808	+		RR42_RS06530	0.58	+0.4
1,429,809	-		RR42_RS06530	0.58	-0.0
1,429,836	-		RR42_RS06530	0.61	-0.1
1,430,336	+				+0.1
1,430,336	+				-2.1
1,430,337	-				+0.3
1,430,362	+				-1.2
1,430,383	+				-0.9
1,430,455	+				+0.5
1,430,455	+				+2.9
1,430,455	+				-0.5
1,430,456	-				+0.3
1,430,504	+				+1.2
1,430,505	-				+1.7
1,430,505	-				-0.1
1,430,505	-				+0.6
1,430,777	+		RR42_RS06535	0.35	-0.7
1,430,777	+		RR42_RS06535	0.35	-0.4
1,430,778	-		RR42_RS06535	0.35	-0.6
1,430,778	-		RR42_RS06535	0.35	-1.1
1,430,778	-		RR42_RS06535	0.35	-0.5
1,430,966	+		RR42_RS06535	0.53	-1.4
1,430,967	-		RR42_RS06535	0.53	+1.3
1,430,968	+		RR42_RS06535	0.53	-0.6
1,431,098	+		RR42_RS06535	0.66	-0.4
1,431,098	+		RR42_RS06535	0.66	-0.3
1,431,099	-		RR42_RS06535	0.66	+0.5
1,431,116	+		RR42_RS06535	0.68	+1.1
1,431,116	+		RR42_RS06535	0.68	+0.1
1,431,117	-		RR42_RS06535	0.68	+0.6
1,431,117	-		RR42_RS06535	0.68	-1.0
1,431,134	+		RR42_RS06535	0.69	+0.6
1,431,134	+		RR42_RS06535	0.69	+1.7
1,431,135	-		RR42_RS06535	0.69	-0.1
1,431,135	-		RR42_RS06535	0.69	+0.9
1,431,135	-		RR42_RS06535	0.69	-0.4
1,431,299	-		RR42_RS06535	0.85	-1.4
1,431,378	-				-0.4
1,431,378	-				+0.8
1,431,378	-				+0.9
1,431,542	+				+0.0
1,431,574	-				-1.1
1,431,574	-				-0.2
1,431,574	-				-0.2
1,431,656	+				-1.1
1,431,916	+		RR42_RS06540	0.33	-0.3
1,431,916	+		RR42_RS06540	0.33	-0.3
1,431,916	+		RR42_RS06540	0.33	-0.3
1,431,916	+		RR42_RS06540	0.33	+1.4
1,431,970	+		RR42_RS06540	0.40	+0.1
1,431,970	+		RR42_RS06540	0.40	+1.3
1,431,970	+		RR42_RS06540	0.40	+1.1
1,431,970	+		RR42_RS06540	0.40	-0.0
1,431,971	-		RR42_RS06540	0.41	+1.2
1,431,985	+		RR42_RS06540	0.43	+2.7
1,432,045	+		RR42_RS06540	0.51	+0.4
1,432,387	+				+0.0